Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1456 167 2e-36 >seq1456 Length=366961 Score = 167 bits (184), Expect = 2e-36 Identities = 511/792 (65%), Gaps = 40/792 (5%) Strand=Plus/Plus Query 16799 TCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACC 16858 ||||| | ||||| || || | ||||| || | ||||||||| || || | || || Sbjct 310675 TCCGCGATGAATTCGATGTAGCGACACATCAACTTGCAGTTCATACCAATCAAACTCACT 310734 Query 16859 GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTAGC 16917 || | ||| |||| | ||| ||| ||||| | ||||| |||||||| || | ||| Sbjct 310735 GGCAAAGCATCCGAAAGAAACTTTTGTTCTATTTCTACCGCCTCCTTAATGATGGCAAGC 310794 Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977 | | || |||| | || | || || | ||| ||| || || ||||| ||||| Sbjct 310795 A-CACGATCCTTTGCAGGCTTTTGAACAATGTATTTGTACAGCAAGCAGGCGAAGTCGCA 310853 Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037 |||| ||||| || || ||||| ||||| || ||||| ||||| |||||| || Sbjct 310854 GTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGAATGTTAACCCAGGCATCAAACC 310913 Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097 ||||| || | ||||||||| |||||||| ||||| ||||| ||||||||||| | Sbjct 310914 GCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAAATACCCTCGACTGC 310973 Query 17098 TGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCAC 17157 ||||| || | || || || || |||| | | | | || |||||| || || | Sbjct 310974 AGCAAAGGCAACTATACGCTCCGCAAACGTAGAATGAGTATCACCAATCCAGTTGAGCGC 311033 Query 17158 CCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT-ATGGCCTT-------------- 17202 ||| | || || ||| | || || | ||| || ||||| || Sbjct 311034 CCATTGCGCCTTCTGCGCGACACACTCTA-GGTTGCTGATGGCGTTGAACAGGAAATCCC 311092 Query 17203 -------------------AAATA--ATTTCTCTTTTTCCTGTAGG-TCGATTATATACG 17240 ||||| ||| || | |||| || || | ||||| | Sbjct 311093 TGCGAGAATACACAAATTAAAATAAGATTCCTTACCGTTCTGTTGGATCTTTGATATATG 311152 Query 17241 TATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT 17300 | || || || || ||||| || || ||||||||||| ||||| ||||| | || | Sbjct 311153 TGTCAATCAGAAGTGAATACATCTCTGAATGTATGTTCTCGATGGCGATCTGCATCCCAT 311212 Query 17301 AAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGT 17360 |||| || ||| | |||| | ||||||||| ||| || || | | ||| || Sbjct 311213 AAAAACACCGGACCTCCGGAACTTGAACTTCTTGACTGAAACGCTCGACCAAATTCTCTA 311272 Query 17361 TCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGT 17420 ||| || || || || || || || || || || | || ||||| | |||| Sbjct 311273 GCACTATTCCATCACTTGCAGCAAAGAAGGCTAACACATATGAGATGAAGTGACGTTCGC 311332 Query 17421 CCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCC 17480 | | ||| |||||| | ||||| ||||| | ||| || || || ||||| Sbjct 311333 CGACCTTGAGACTATTCCAGTCACTAAAATCCTTGGAGAGATCGACCTCCTCAACGGTCC 311392 Query 17481 AAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATA 17540 |||| || ||||| || ||||| | | ||||| ||| | |||||| |||||||||| Sbjct 311393 AAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGGTATTGGATGGGGAATA 311452 Query 17541 CAACATATCTAT 17552 |||| ||| || Sbjct 311453 GAACAAATCGAT 311464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517517471396640