Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1456 147 2e-30 >seq1456 Length=366961 Score = 147 bits (162), Expect = 2e-30 Identities = 407/622 (65%), Gaps = 54/622 (9%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||||||||| ||||| || || || || ||||| ||||| ||| || |||||| Sbjct 310840 CAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGAATGTTAAC 310899 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| || ||||| || | ||| ||||| || || || || || ||||| Sbjct 310900 CCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAA 310959 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 |||||||| || | ||||| || | || || ||||| |||||| || ||| || | Sbjct 310960 ATACCCTCGACTGCAGCAAAGGCAACTATACGCTCCGCAAACGTAGAATGAGTATCACCA 311019 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT-ATGGCCTT 16440 ||||| || | |||||| || || || | ||| || | ||| || ||||| || Sbjct 311020 ATCCAGTTGAGCGCCCATTGCGCCTTCTGCGCGACACACTCTAG-GTTGCTGATGGCGTT 311078 Query 16441 AAACA--ATTTCTCT---------------TT---------TTCCTGAAT---------- 16464 |||| | || || || ||||| | Sbjct 311079 GAACAGGAAATCCCTGCGAGAATACACAAATTAAAATAAGATTCCTTACCGTTCTGTTGG 311138 Query 16465 ATCGATTATATACGTATCAATCAGTAAACTG--TACATTTCTGAGTGTATGTTCTCTATG 16522 ||| | ||||| || |||||||| || || ||||| ||||| ||||||||||| ||| Sbjct 311139 ATCTTTGATATATGTGTCAATCAG--AAGTGAATACATCTCTGAATGTATGTTCTCGATG 311196 Query 16523 GCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC--CACGTAAAATC 16580 || ||||| | ||||| || || || |||||| | ||| ||||| || ||| | Sbjct 311197 GCGATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTGACTGAAA--C 311254 Query 16581 GTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA----ATATG 16636 | || ||| ||||| ||| || || |||||||||||||| || || | ||||| Sbjct 311255 GCTCGACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACACATATG 311314 Query 16637 TGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGAT 16696 | ||||| | |||| | | ||| ||| ||| || | ||||| ||||| Sbjct 311315 AG----ATGAAGTGACGTTCGCCGACCTTGAGACTATTCCAGTCACTAAAATCCTTGGAG 311370 Query 16697 ATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATA 16756 | ||| || || || |||||||| || ||||| || ||||| | | ||||| | Sbjct 311371 AGATCGACCTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACA 311430 Query 16757 TCATTGTATTGTATGGGAAATA 16778 || | |||||| ||||| |||| Sbjct 311431 TCGTGGTATTGGATGGGGAATA 311452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511386604627360