Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1456 109 7e-19 seq2115 84.2 3e-11 >seq1456 Length=366961 Score = 109 bits (120), Expect = 7e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || ||||| ||||||||||||||||| || ||||| || | ||| ||| | Sbjct 310832 ACAGCAAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGA 310891 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | || ||||| | || || ||||| ||||||||||| | || || |||| Sbjct 310892 ATGTTAACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAG 310951 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 | |||||||| || || ||||| |||||||||| Sbjct 310952 AGAAGAAAATACCCTCGACTGCAGCAAAGGCAA 310984 >seq2115 Length=135315 Score = 84.2 bits (92), Expect = 3e-11 Identities = 176/260 (68%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 53978 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 54037 || || |||||||| | ||| ||| | || ||| || | | ||| ||||||| | Sbjct 40255 AAACCTGGACATTCGTGTGGATCCATGAGCGTCCAATCCTCATTGGCCTCCACTCGTCGC 40314 Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 54096 || |||| ||| || ||||| || || ||| || | |||| | | ||| ||| Sbjct 40315 ATGAAGATATCCGGTATCCAGAGGGC-ATAGAACAAGTCTCGACCACGAATTTCTTCGGC 40373 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || ||||| ||| | || | |||| | | || | |||||||||||||| ||| Sbjct 40374 ACCAGTATTTTTTCGCATTTCAATGAACTGAAGGACGTCCGGATGCCACGGTTCCAGGTA 40433 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 | || | | | || || ||||| ||||| || || || ||||| | ||| |||||||| Sbjct 40434 GACGGCGAAAGCACCGGGGCGTTTATTTCCGCCTTGGTCGATGTAGCGAGCAGTGTTATT 40493 Query 54217 ATAAACTCTCAACATTGGAA 54236 | | || | |||||| |||| Sbjct 40494 AAACACACGCAACATGGGAA 40513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593689331231040