Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq1131 484 2e-132 >seq1131 Length=1733 Score = 484 bits (536), Expect = 2e-132 Identities = 589/800 (74%), Gaps = 2/800 (0%) Strand=Plus/Plus Query 289 TATTGATTATGAACGTTGGCGTTTAACTCGTGCGAATGCTGATGCGGCTGAGCTGGCCAA 348 |||||| || ||||| || | || |||||| | || || || |||||| || Sbjct 929 TATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGACGCACAGGAGCTGAAAAA 988 Query 349 TGAGAAAAAGCGTCGC-GAGGTCGTAGAGACTGCGTTTTGTACCTTCGTGTTATCCAGAA 407 || | | | | ||| || || || || || || || ||||| |||||| | || | | Sbjct 989 TGCCAGAGA-CTCCGCTGAAGTGGTGGAAACCGCATTCTGTACTTTCGTGCTGTCGCGGA 1047 Query 408 TTGCCGCTGAAATATCCAGTATCCTGGATGGCATACCCCTTTCGATGCAGCGCCGGTTCC 467 | || | |||||| ||||||| || || || || ||||| ||| ||||||| || || | Sbjct 1048 TCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCGGTGCAGCGGCGTTTTC 1107 Query 468 CTGAACTGGAAAATCGGCATATCGAGTTCCTGAAAGGGGACGTAATAAAGGCGATGAATA 527 | ||||||||||| || ||| | || ||||||||| |||| | || || || ||||| | Sbjct 1108 CGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACA 1167 Query 528 AGGCTGCGGCGCTGGATGAACGGATTCCGGGGTTGTTGAATGATTATATCGACCAGTCAG 587 | || || ||||||||||||| ||| ||||||||| ||| ||| |||||||| ||||||| Sbjct 1168 AAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAG 1227 Query 588 GTAGCTAATCTGCGAACAGCGGTAAAAGCTGGTCTGAAATCACTATACCGCCCGGAACCC 647 || | ||||| || || || || ||||| | | | ||||| || Sbjct 1228 GTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACTGTTCAGGCCGGAGCCA 1287 Query 648 ATGACAGCTGTCGAATGGGCCGATGCGCATTATTACCTTCCGAAAGAATCCGCTTATCAG 707 ||| || || |||||||| ||||| |||| || || |||||||||||||| || ||| Sbjct 1288 CAGACCGCCGTTGAATGGGCGGATGCTAATTACTATCTCCCGAAAGAATCCGCATACCAG 1347 Query 708 GAGGGTCGCTGGGAAACACTGCCATTTCAGCGCGCGATCATGAATGCGATGGGCAGTGAC 767 || || ||||||||||||||||| |||||||| || |||||||||||||||||||| ||| Sbjct 1348 GAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGAC 1407 Query 768 TATATTCGCATTGTTAACGTCATTAAGTCGGCGCGAGTAGGCTATTCGAAAATGCTCCTC 827 || || || || || || | ||||| || || || || ||||| |||||||| || Sbjct 1408 TACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTG 1467 Query 828 GGCGTCATTGCTTATTTCATCGAGCACAAACAGCGTAATGAGTTGCTGTGGCTGCCGACC 887 || || ||| || || || ||||| || ||||| || | | ||| ||||||| Sbjct 1468 GGTGTTTATGCCTACTTTATAGAGCATAAGCAGCGCAACACCCTTATCTGGTTGCCGACG 1527 Query 888 GACGGCGACGCAGATAATTTCATGAAGTCACACGTTGAACCGACGATTCGTGATGTCCCT 947 || || || || || || || ||||| | |||||||| ||||| ||||||||| | || Sbjct 1528 GATGGTGATGCCGAGAACTTTATGAAAACCCACGTTGAGCCGACTATTCGTGATATTCCG 1587 Query 948 TCTCTGTTATCACTTGCACCCTGGTACGGGAAAAAGCACAGGGACAATACCCTGTCGATG 1007 || ||| | | || || || ||||| || ||||||||| |||| || || || | ||| Sbjct 1588 TCGCTGCTGGCGCTGGCCCCGTGGTATGGCAAAAAGCACCGGGATAACACGCTCACCATG 1647 Query 1008 AAGCGTTTTACCAATGGCCGTGGATTTTGGTGCCTGGGCGGTAAGGCTGCAAAAAACTAT 1067 |||||||| || ||||| ||||| || ||||||||||||||||| || ||||||||||| Sbjct 1648 AAGCGTTTCACTAATGGGCGTGGCTTCTGGTGCCTGGGCGGTAAAGCGGCAAAAAACTAC 1707 Query 1068 CGTGAAAAATCAGTAGATGT 1087 |||||||| || || ||||| Sbjct 1708 CGTGAAAAGTCGGTGGATGT 1727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148270744015512