Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1456 143 3e-29 seq1867 116 4e-21 seq1332 102 8e-17 >seq1456 Length=366961 Score = 143 bits (158), Expect = 3e-29 Identities = 226/324 (70%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 116593 GAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAA 116652 |||||| | || || || | |||||||| ||||||| || | |||| | || || Sbjct 311472 GAACCCACATCGATTTGTTCTATTCCCCATCCAATACCACGATGTTTGGCAGTTTTATAA 311413 Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGA 116712 || || | || ||||| |||||||| |||||||| || || |||||||| || || Sbjct 311412 GAAAGCAGTCGCATCGTTTTGGACCGTTGAGGAGGTCGATCTCTCCAAGGATTTTAGTGA 311353 Query 116713 CTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGC 116772 |||| | | | || | | ||| || || |||||| | ||| | ||||| || || Sbjct 311352 CTGGAATAGTCTCAAGGTCGGCGAACGTCACTTCATCTCATATGTGTTAGCCTTCTTTGC 311293 Query 116773 CGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGT 116832 || || || || || || |||||| |||||||||||||| ||| || || || || Sbjct 311292 TGCAAGTGATGGAATAGTGCTAGAGAATTTGGTCGAGCGTTTCAGTCAAGAAGTTCAAGT 311233 Query 116833 GGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAAT 116892 | |||| ||||| || || || | ||||||||||| |||||| | || || || || Sbjct 311232 TCCGGAGGTCCGGTGTTTTTATGGGATGCAGATCGCCATCGAGAACATACATTCAGAGAT 311173 Query 116893 GTATTCGACCCTCATCGACACGTA 116916 |||||| || || ||||| || Sbjct 311172 GTATTCACTTCTGATTGACACATA 311149 Score = 140 bits (154), Expect = 3e-28 Identities = 131/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||||| | || ||||| || || |||||||| | ||||| || ||||| |||||||| Sbjct 310994 GAGCGTATAGTTGCCTTTGCTGCAGTCGAGGGTATTTTCTTCTCTGGCAGCTTCGCCGCA 310935 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 ||||||||||| || |||||||| | ||||| || | || |||||||| || || ||| Sbjct 310934 ATATTTTGGCTGAAAAAACGCGGTTTGATGCCTGGGTTAACATTCAGCAATGAACTGATC 310875 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAA 117201 ||||| |||||||| || |||||||| ||||| ||||||| ||| Sbjct 310874 AGTAGGGATGAGGGTCTACACTGCGACTTCGCCTGCTTGCTGTACAA 310828 >seq1867 Length=410790 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||||||||| || || || || || || ||||||||| | || || ||||| | Sbjct 315464 AATGCAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAAG 315405 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | |||| || |||| ||||| || |||||||| | ||||| Sbjct 315404 CGATACCATTGAGAATGTAAAGGCGAAGATTCAAGACAAGGAAGGCATCCCACCTGACCA 315345 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | || |||||||| || || |||| || || || ||| ||||| Sbjct 315344 GCAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAA 315285 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| || || |||| || ||||| ||| | || || | || ||| Sbjct 315284 CATCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGTCTGCGTGGTGGC 315236 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| || |||||| |||| ||||| |||| Sbjct 291656 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291597 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | || |||| || || || |||||||| | ||||| Sbjct 291596 GACACAATTGAGAACG-TGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 291538 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | ||| |||||||| |||| |||| || || | |||||||| Sbjct 291537 GCAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAA 291478 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||| || | || || || |||||| | ||| Sbjct 291477 CATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGC 291441 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| || |||||| |||| ||||| |||| Sbjct 291884 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291825 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | || |||| || || || |||||||| | ||||| Sbjct 291824 GACACAATTGAGAACG-TGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 291766 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | ||| |||||||| |||| |||| || || | |||||||| Sbjct 291765 GCAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAA 291706 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||| || | || || || |||||| | ||| Sbjct 291705 CATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGC 291669 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| || |||||| |||| ||||| |||| Sbjct 292112 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 292053 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | || |||| || || || |||||||| | ||||| Sbjct 292052 GACACAATTGAGAACG-TGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 291994 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | ||| |||||||| || || |||| || || | |||||||| Sbjct 291993 GCAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACATTGTCTGACTACAA 291934 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||| || | || || || |||||| | ||| Sbjct 291933 CATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGC 291897 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| || |||||| |||| ||||| |||| Sbjct 291428 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291369 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | || |||| || || || |||||||| | ||||| Sbjct 291368 GACACAATTGAGAACG-TGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 291310 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | ||| |||||||| || || |||| || || | || ||||| Sbjct 291309 GCAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACTTTGTCTGATTACAA 291250 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||| ||| | || |||| | || |||||| Sbjct 291249 CATCCAGAAAGAGTCTACTTTGCACTTGGTTTTGCGC 291213 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| || ||||| | || ||||| || | | Sbjct 292340 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACTATCACTCTTGAGGTCGAGGCTAGC 292281 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | || |||| || || || |||||||| | ||||| Sbjct 292280 GACACAATTGAGAACG-TGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 292222 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | ||| |||||||| |||| |||| || || | |||||||| Sbjct 292221 GCAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAA 292162 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||| || | || || || |||||| | ||| Sbjct 292161 CATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGC 292125 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || || || || || || |||||| | || || ||||| | | Sbjct 315235 ATGCAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAGC 315176 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || |||| |||||||| |||||||| | |||||| Sbjct 315175 GATACCATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGCATCCCACCTGACCAG 315116 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || |||||||| || || |||| || || || ||| |||||| Sbjct 315115 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAAC 315056 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| || || |||| || ||||| ||| Sbjct 315055 ATCCAAAAAGAATCCACTCTCCATCTGGTG 315026 >seq1332 Length=523337 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| ||||| | || || |||||||| || | || |||||| | | Sbjct 494443 ATGCAGATATTCGTCAAAACATTGACAGGGAAAACCATAACTTTGGAAGTCGAATCAAGT 494384 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||||| ||||||| || || || || || || | ||||| Sbjct 494383 GATACCATCGAAAATGTCAAGGCGAAAATTCAGGATAAGGAAGGGATTCCACCCGACCAA 494324 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | || || || || |||| |||| ||||| ||| ||||||||| Sbjct 494323 CAACGTCTGATTTTTGCAGGGAAGCAATTGGAAGACGGACGCACTCTCTCAGACTACAAC 494264 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || ||| | ||||| || || || Sbjct 494263 ATCCAAAAAGAGTCTACGCTCCACCTTGT 494235 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || || || ||||| || |||| || || || | Sbjct 494671 ATGCAGATTTTCGTGAAGACGTTGACAGGAAAGACCATAACTCTCGAGGTTGAGGCGAGT 494612 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || |||| || || || ||||| || | || ||| Sbjct 494611 GATACCATCGAGAATGTGAAGGCTAAGATTCAAGATAAGGAAGGCATTCCACCTGATCAG 494552 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||||||||||||||| || || | ||||| || ||||||||| Sbjct 494551 CAGCGCTTGATTTTCGCGGGCAAACAGCTAGAAGATGGACGCACTCTTTCTGACTACAAC 494492 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| ||||| | || || || || || | |||||| | || || Sbjct 494491 ATCCAAAAGGAATCGACTCTTCACCTCGTTCTCCGCTTGCGCGGTGG 494445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515191197836480