Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1867 154 2e-32 seq1332 114 2e-20 >seq1867 Length=410790 Score = 154 bits (170), Expect = 2e-32 Identities = 178/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| ||||| || | ||| | || || | | Sbjct 291428 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291369 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | ||| ||| ||||||||||| ||||| || |||||||| || Sbjct 291368 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291309 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | |||||||| || || |||||| ||||||| |||| || || ||||| || Sbjct 291308 CAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACTTTGTCTGATTACAAC 291249 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTC 124777 || || ||||| || |||||||| |||||||| || | || ||||| ||||| |||| Sbjct 291248 ATCCAGAAAGAGTCTACTTTGCACTTGGTTTTGCGCCTTCGTGGTGG--TTAAATATTC 291192 Score = 134 bits (148), Expect = 2e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 ||||||||||||| | |||||||| || || || || || || | || ||||||||| Sbjct 315465 CAATGCAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAA 315406 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| ||| |||| ||| |||||||| || ||||| || |||||||| | Sbjct 315405 GCGATACCATTGAGAATGTAAAGGCGAAGATTCAAGACAAGGAAGGCATCCCACCTGACC 315346 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || | | |||||||| || |||||| | || || ||||||| | ||||| | Sbjct 315345 AGCAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACA 315286 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||||||||| ||| | ||| |||| | ||| | || ||||| || Sbjct 315285 ACATCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGTCTGCGTGGTGGCAT 315234 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| || || || || || || || | || ||||||||| Sbjct 315235 ATGCAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAGC 315176 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || ||| |||||||| |||||||| || |||||||| || Sbjct 315175 GATACCATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGCATCCCACCTGACCAG 315116 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | |||||||| || |||||| | || || ||||||| | ||||| || Sbjct 315115 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAAC 315056 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||||||||| ||| | ||| |||| | ||| |||| |||||| Sbjct 315055 ATCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGTCTACGCGGTGGT 315008 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| ||||| || | ||| | || || | | Sbjct 292112 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 292053 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | ||| ||| ||||||||||| ||||| || |||||||| || Sbjct 292052 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291993 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | |||||||| || || |||||| ||||||| |||| ||||| || || || Sbjct 291992 CAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACATTGTCTGACTACAAC 291933 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || | || | || | || | || |||||||| Sbjct 291932 ATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGCCTTCGCGGTGGTAT 291883 Score = 123 bits (136), Expect = 4e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| | ||||| || || ||||| ||||| ||| | ||| | || || Sbjct 292343 ACGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACTATCACTCTTGAGGTCGAGGCT 292284 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 | || |||||| || | ||| ||| ||||||||||| ||||| || |||||||| Sbjct 292283 AGCGACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGAC 292224 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | |||||||| || || |||||||| || || |||| ||||| || || Sbjct 292223 CAGCAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTAC 292164 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || |||||||| || | || | || | || | || |||||||| Sbjct 292163 AACATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGCCTTCGCGGTGGTAT 292111 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| ||||| || | ||| | || || | | Sbjct 291656 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291597 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | ||| ||| ||||||||||| ||||| || |||||||| || Sbjct 291596 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291537 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | |||||||| || || |||||||| || || |||| ||||| || || || Sbjct 291536 CAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAAC 291477 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || | || | || | || | || |||||||| Sbjct 291476 ATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGCCTTCGCGGTGGTAT 291427 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| ||||| || | ||| | || || | | Sbjct 291884 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291825 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | ||| ||| ||||||||||| ||||| || |||||||| || Sbjct 291824 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291765 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | |||||||| || || |||||||| || || |||| ||||| || || || Sbjct 291764 CAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAAC 291705 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || | || | || | || | || |||||||| Sbjct 291704 ATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGCCTTCGCGGTGGTAT 291655 >seq1332 Length=523337 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||| || || ||||| ||| | ||| | || || | | Sbjct 494215 ATGCAAATTTTTGTTAAAACGCTAACCGGAAAGACTATCACTCTGGAGGTCGAGGCTAGT 494156 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | ||| || ||||||||||| || || || || || ||||| Sbjct 494155 GATACGATCGAGAACGTTAAAGCTAAGATTCAAGATAAGGAGGGCATTCCTCCAGATCAG 494096 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||||||||| || || || || || |||| || | ||||| || Sbjct 494095 CAGCGTTTGATTTTTGCAGGCAAGCAGTTGGAAGACGGTCGCACTCTCTCTGATTACAAC 494036 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| ||||| ||| | |||||||| | ||||| || || ||| Sbjct 494035 ATTCAAAAGGAATCCACTCTTCATTTGGTGCTCCGTTTGCGTGGCGGT 493988 Score = 114 bits (126), Expect = 2e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | || ||| | ||||| ||||| |||||| | || | ||| ||| | Sbjct 494443 ATGCAGATATTCGTCAAAACATTGACAGGGAAAACCATAACTTTGGAAGTCGAATCAAGT 494384 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || ||||||||| ||||| ||||| || ||||| || ||| Sbjct 494383 GATACCATCGAAAATGTCAAGGCGAAAATTCAGGATAAGGAAGGGATTCCACCCGACCAA 494324 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||||||||| || ||||| || || | || || | ||| || || Sbjct 494323 CAACGTCTGATTTTTGCAGGGAAGCAATTGGAAGACGGACGCACTCTCTCAGACTACAAC 494264 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || |||||||| || || | || | ||| | || | || ||||| || ||| || Sbjct 494263 ATCCAAAAAGAGTCTACGCTCCACCTTGTTCTCCGACTTCGCGGTGGCATGCAAATTT 494206 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||| || || |||||| | ||| |||| || | | Sbjct 494671 ATGCAGATTTTCGTGAAGACGTTGACAGGAAAGACCATAACTCTCGAGGTTGAGGCGAGT 494612 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || ||||||||||| ||||| || ||||||||||| Sbjct 494611 GATACCATCGAGAATGTGAAGGCTAAGATTCAAGATAAGGAAGGCATTCCACCTGATCAG 494552 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || ||||| |||| ||| | || || | || || || Sbjct 494551 CAGCGCTTGATTTTCGCGGGCAAACAGCTAGAAGATGGACGCACTCTTTCTGACTACAAC 494492 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||| | || | ||| | || || || ||||| || Sbjct 494491 ATCCAAAAGGAATCGACTCTTCACCTCGTTCTCCGCTTGCGCGGTGGGAT 494442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755414940966400