Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1332 113 5e-20 seq2035 104 3e-17 seq1384 104 3e-17 seq2358 100 3e-16 seq2351 100 3e-16 seq633 100 3e-16 seq2493 98.7 1e-15 seq1925 98.7 1e-15 seq1802 98.7 1e-15 seq1750 98.7 1e-15 seq885 91.5 2e-13 seq1867 89.7 6e-13 seq93 89.7 6e-13 seq2069 86.0 7e-12 >seq1332 Length=523337 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||| | ||||||||| | ||| ||||||||||| |||||||||| ||||| || Sbjct 493998 AAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGA 494057 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| || | |||||| || || || || | |||||||| || | || | || |||| Sbjct 494058 CCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCC 494117 Query 43086 TTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144 || | | ||| | || | || | || || | | ||| || || | || || || | || Sbjct 494118 TTAT-CTTGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGACCTCCAGAGT 494176 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || |||||||| || ||||| |||||||| Sbjct 494177 GATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 >seq2035 Length=189789 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| || |||| |||| ||||||||||||| || || || ||||||||||||| ||||| Sbjct 62486 AAAAGTTCCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 62427 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 62426 CACCACTATACTACCGAGGA 62407 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| || |||| |||| ||||||||||||| || || || ||||||||||||| ||||| Sbjct 63072 AAAAGTTCCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 63131 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 63132 CACCACTATACTACCGAGGA 63151 >seq1384 Length=454056 Score = 104 bits (114), Expect = 3e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||| || |||| |||| ||||||||||||| || || || ||||||||||||| ||| Sbjct 170324 GAAAAGTTGGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATA 170383 Query 60116 CTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||| Sbjct 170384 CTCACCACTATACTACCGAGGA 170405 Score = 104 bits (114), Expect = 3e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||| || |||| |||| ||||||||||||| || || || ||||||||||||| ||| Sbjct 171715 GAAAAGTTGGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATA 171656 Query 60116 CTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||| Sbjct 171655 CTCACCACTATACTACCGAGGA 171634 >seq2358 Length=1285720 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| ||||||||||||| || || || ||||||||||||| ||||| Sbjct 780892 AAAAGTGGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 780833 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 780832 CACCACTATACTACCGAGGA 780813 >seq2351 Length=1334318 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| ||||||||||||| || || || ||||||||||||| ||||| Sbjct 761334 AAAACCTCCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 761275 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 761274 CACCACTATACTACCGAGGA 761255 >seq633 Length=67832 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 63130 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 63071 Query 60126 TACTACCGAGGATTG 60140 |||||||||||| || Sbjct 63070 TACTACCGAGGAGTG 63056 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 67760 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 67819 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 67820 TACTACCGAGGA 67831 >seq2493 Length=655524 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 365771 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 365712 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 365711 TACTACCGAGGA 365700 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 366301 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 366242 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 366241 TACTACCGAGGA 366230 >seq1925 Length=302650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 100649 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 100708 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 100709 TACTACCGAGGA 100720 >seq1802 Length=801687 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 776267 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 776326 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 776327 TACTACCGAGGA 776338 >seq1750 Length=85878 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 71665 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 71724 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 71725 TACTACCGAGGA 71736 >seq885 Length=21769 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||| |||||||| || || || ||||||||||||| ||||||||||||| Sbjct 20468 CTCCCCGGCCGGGAGTCGAACCCAGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 20409 Query 60126 TACTACCGAGGAT 60138 ||| ||||||||| Sbjct 20408 TACCACCGAGGAT 20396 >seq1867 Length=410790 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| ||| | ||| || ||||| || |||||||| | |||||| || | Sbjct 315248 ACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACC 315307 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || || || || || || || || | ||||||||||| | || | || ||||| Sbjct 315308 GTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTT 315367 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | || | || | || | | || ||||| | ||| || || | |||| Sbjct 315368 GT-CTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGA 315426 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| || || || || ||||| || || ||||||||| Sbjct 315427 TGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 >seq93 Length=188328 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| | ||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 22488 CTCCCCGGCCGAGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 22429 Query 60126 TACTACCGAGGA 60137 ||| |||||||| Sbjct 22428 TACAACCGAGGA 22417 >seq2069 Length=157881 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||| ||||||||| ||||||||||||| Sbjct 21898 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTAACAGGCGGAGATACTCACCACTA 21957 Query 60126 TACTACCGAGGA 60137 || |||||||| Sbjct 21958 AACAACCGAGGA 21969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571786521713440