Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_002730.1 Length=38297 Score E Sequences producing significant alignments: (Bits) Value seq1110 383 4e-102 >seq1110 Length=2318 Score = 383 bits (424), Expect = 4e-102 Identities = 244/265 (92%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 17302 GTCAGAGAGATTGAGGTATGAGCAGGGTCACCGCGATTATCTCCGCTCTGGTTATCTGCA 17361 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1592 GTCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCA 1651 Query 17362 TCATCGTTTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 17421 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1652 TCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 1711 Query 17422 AGCAGCGCGACAAAAACACCAGAGAACTGAAGCTGGCGAACGCCACCATTACTGACATGC 17481 |||||||||||||| ||||||||||||||||||||||||| | |||||||| |||| Sbjct 1712 CCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGC 1771 Query 17482 AACAGCGCCAGCTTGATGCTGATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATG 17541 | ||| |||| ||||| || ||| |||||||| ||||||||||||||||||||||||| Sbjct 1772 AGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATG 1831 Query 17542 CGAAAGCTGAAAATGATGCTCTTCG 17566 |||||||||||||||||||||| || Sbjct 1832 CGAAAGCTGAAAATGATGCTCTGCG 1856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122422478694984