Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1867 95.1 1e-14 seq1332 91.5 1e-13 >seq1867 Length=410790 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| || || || |||||||| ||| ||| ||| |||| || Sbjct 315027 ACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTCA 315086 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| ||||| || ||||| ||||| ||||| || || | || || ||||| | Sbjct 315087 AGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTGA 315146 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || | | || || || | ||| |||||||| Sbjct 315147 ATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTA 315206 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||||||||| || |||||| Sbjct 315207 CCGGTCAGGGTCTTCACAAATATCTGCATG 315236 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||||||| || | ||| |||| |||| |||||| || ||||| Sbjct 292150 TCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAA 292209 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || || ||||| || || | || ||||| || ||| || || || | Sbjct 292210 ATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTC 292269 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | | |||| ||||| | || || |||||||| ||||| ||||||||| Sbjct 292270 TCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATAGTCTTGCCAGTCAGCGTCTTCACA 292329 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 292330 AAGATCTGCAT 292340 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||||| || ||| ||||| |||||||| || || ||| |||| Sbjct 291217 AAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCGTCC 291276 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || |||||||| || ||||| || | || || ||||| || || | || ||||| || Sbjct 291277 TCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 291336 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || || || | | | |||| | |||| ||||| | ||| || ||| Sbjct 291337 TGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTC 291396 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||| ||||||||||| || ||||| Sbjct 291397 TTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||||||| || | ||| |||| |||| |||||| || ||||| Sbjct 291466 TCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAA 291525 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || || ||||| || || | || ||||| || ||| || || || | Sbjct 291526 ATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTC 291585 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | |||| ||||| | ||| || |||||||| ||||| ||||||||| Sbjct 291586 TCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACA 291645 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 291646 AAAATCTGCAT 291656 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||||||| || | ||| |||| |||| |||||| || ||||| Sbjct 291694 TCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAA 291753 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || || ||||| || || | || ||||| || ||| || || || | Sbjct 291754 ATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTC 291813 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | |||| ||||| | ||| || |||||||| ||||| ||||||||| Sbjct 291814 TCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACA 291873 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 291874 AAAATCTGCAT 291884 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||||||| || | ||| |||| || |||||||| || ||||| Sbjct 291922 TCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAA 291981 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || || ||||| || || | || ||||| || ||| || || || | Sbjct 291982 ATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTC 292041 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | |||| ||||| | ||| || |||||||| ||||| ||||||||| Sbjct 292042 TCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACA 292101 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 292102 AAAATCTGCAT 292112 >seq1332 Length=523337 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| ||||| ||||||||||| || || |||| |||| ||| Sbjct 494007 ACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTCC 494066 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || || || ||||| ||||| || || ||||| | |||||||| || | Sbjct 494067 AACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTGA 494126 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| | | | | || | | |||| ||||||| || || ||||| Sbjct 494127 ATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGACCTCCAGAGTGATAGTCTTT 494186 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || || ||||| ||||||||| Sbjct 494187 CCGGTTAGCGTTTTAACAAAAATTTGCATG 494216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395054264471308