Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1456 120 3e-22 >seq1456 Length=366961 Score = 120 bits (132), Expect = 3e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || || || || || || || |||||||| ||||| || ||||| || |||||| Sbjct 310837 AAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGAATGTT 310896 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 || || |||||||| || |||||||| | |||||||||||| ||||| || || ||| Sbjct 310897 AACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAG 310956 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACG 14366 || || ||||| ||||||||||| || | || || || |||||| Sbjct 310957 AAAATACCCTCGACTGCAGCAAAGGCAACTATACGCTCCGCAAACG 311002 Score = 93.3 bits (102), Expect = 4e-14 Identities = 188/274 (69%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 || ||||| ||||| || | |||||| || || |||||||| || || || ||||| Sbjct 311146 ATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTTCTCGATGGCGATCTGC 311205 Query 14534 AAACCATAAAAACATC-TAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCA 14591 | ||||||||||| | | || | || | ||| || || ||| | ||| | ||| ||| Sbjct 311206 ATCCCATAAAAACACCGGACCTCCGGAAC-TTGAACTTCTTGACTGAAA-CGCTCGACCA 311263 Query 14592 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14651 |||| || ||||| |||||||| || ||||| || || || | | | || |||| Sbjct 311264 AATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACACATATGAGATGAAGT 311323 Query 14652 ATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCAT 14711 | || | |||| | ||||| || |||||||| || ||||| || || | Sbjct 311324 GACGTTCGCCGACCTTGAGACTATTCCAGTCACTAAAATCCTTGGAGAGATCGACCTCCT 311383 Query 14712 CAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 |||| |||||||| || || ||||| ||||| Sbjct 311384 CAACGGTCCAAAACGATGCGACTGCTTTCTTATA 311417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482319384516640