Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1867 131 1e-25 seq1332 86.0 5e-12 >seq1867 Length=410790 Score = 131 bits (144), Expect = 1e-25 Identities = 174/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||||||||| || ||| | ||||| || ||||| ||| | || || ||| | || Sbjct 315236 CATGCAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAG 315177 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||| | | || | ||| |||| || ||| | ||||||||| | || |||||| Sbjct 315176 CGATACCATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGCATCCCACCTGACCA 315117 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGA--TTCCATGACTATGAACGATTAC 25008 ||| ||||| || | ||| ||||||||||| ||||| || | ||| || ||||||| Sbjct 315116 GCAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGA--ACTCTGTCCGATTAC 315059 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAATCAATT 25068 | ||| || ||||| |||| || ||| | ||| | || | ||||| ||| ||||| || Sbjct 315058 AACATCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGTCTACGCGGTGGTTAATCATTT 314999 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| ||||| || || || | || || || || || ||| | || || ||| | ||| Sbjct 315463 ATGCAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAAGC 315404 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | || | ||| |||| || ||| | || |||||| | || ||||||| Sbjct 315403 GATACCATTGAGAATGTAAAGGCGAAGATTCAAGACAAGGAAGGCATCCCACCTGACCAG 315344 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGA--TTCCATGACTATGAACGATTACA 25009 || ||||| || | ||| ||||||||||| ||||| || | ||| || |||||||| Sbjct 315343 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGA--ACTCTGTCCGATTACA 315286 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| || ||||| |||| || ||| | ||| | || |||| || || Sbjct 315285 ACATCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGTCTGCGTGGTGG 315237 >seq1332 Length=523337 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || ||||| || || || ||||| ||||| | || |||||||| || Sbjct 494443 ATGCAGATATTCGTCAAAACATTGACAGGGAAAACCATAACTTTGGAAGTCGAATCAAGT 494384 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | |||| ||| |||| |||||| | || ||||| | || ||||| Sbjct 494383 GATACCATCGAAAATGTCAAGGCGAAAATTCAGGATAAGGAAGGGATTCCACCCGACCAA 494324 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | ||| || || ||| ||||||| ||| | || |||| | Sbjct 494323 CAACGTCTGATTTTTGCAGGGAAGCAATTGGAAGACGGACGCACTCTCTCAGACTACAAC 494264 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || || |||||| | ||||| || | || | ||| | ||||| || Sbjct 494263 ATCCAAAAAGAGTCTACGCTCCACCTTGTTCTCCGACTTCGCGGTGG 494217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418281833548160