Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1456 154 1e-32 seq1867 125 6e-24 seq1332 98.7 9e-16 seq2115 89.7 5e-13 seq1873 86.0 6e-12 >seq1456 Length=366961 Score = 154 bits (170), Expect = 1e-32 Identities = 542/842 (64%), Gaps = 52/842 (6%) Strand=Plus/Minus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 ||||| || ||| || ||| || | | ||||||| | || || || |||| | || Sbjct 311489 GAACCTCTGTTGAAACCGAACCCACATCGATTTGTTCTATTCCCCATCCAATACCACGAT 311430 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 ||||| | | || || || |||| ||||||||||||||||| || || || || || Sbjct 311429 GTTTGGCAGTTTTATAAGAAAGCAGTCGCATCGTTTTGGACCGTTGAGGAGGTCGATCTC 311370 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGA--GAAATTTTATTAAAC 57687 || |||||| | || || ||| || ||||| | || | || | | || || | Sbjct 311369 TCCAAGGATTTTAGTGACTGGAATAGTCTCAAGG--TCGGCGAACGTCACTTCATCTCAT 311312 Query 57688 ACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGAT 57747 | ||||| || || || || ||| ||||| || || ||||||||||||| || Sbjct 311311 ATGTGTTAGCCTTCTTTGCTGCAAGTGATGGAATAGTGCTAGAGAATTTGGTCG--AGCG 311254 Query 57748 TTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 ||||| |||||||| ||||| |||||| | || ||||| || | || | ||||| Sbjct 311253 TTTCAGTCAAGAAGTTCAAGTTCCGGAGGTCCGGTGTTTTTATGGGATGCAGATCGCCAT 311194 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAAC 57863 || ||| | |||||||| |||||||| || || || || || || | || || |||| Sbjct 311193 CGAGAACATACATTCAGAGATGTATTCACTTCTGATTGACACATATATCAAAGATCCAAC 311134 Query 57864 --GACG---AGAAA-----------------------CGTAG------ACTGTTCAACGC 57889 ||| || || || || ||||||||||| Sbjct 311133 AGAACGGTAAGGAATCTTATTTTAATTTGTGTATTCTCGCAGGGATTTCCTGTTCAACGC 311074 Query 57890 GATC-GAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAA 57948 ||| | ||| | | | |||| ||||||| | ||| | |||| ||||| Sbjct 311073 CATCAGCAACCTAGAGTGTG-TCGCGCAGAAGGCGCAATGGGCGCTCAACTGGAT---TG 311018 Query 57949 GCGCCAC---GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATAT 58005 | | || | ||||| || ||| | || | || || || || ||||| ||||| | Sbjct 311017 GTGATACTCATTCTACGTTTGCGGAGCGTATAGTTGCCTTTGCTGCAGTCGAGGGTATTT 310958 Query 58006 TCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCC 58065 |||| || |||||||| || |||||||||||| |||| |||||||| ||||||| || Sbjct 310957 TCTTCTCTGGCAGCTTCGCCGCAATATTTTGGCTGAAAAAACGCGGTTTGATGCCTGGGT 310898 Query 58066 TGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCC 58125 | || || ||||| || |||| | || |||||||| || || || || ||| Sbjct 310897 TAACATTCAGCAATGAACTGATCAGTAGGGATGAGGGTCTACACTGCGACTTCGCCTGCT 310838 Query 58126 TAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCG 58185 | ||||| ||||||| | || || | |||||| | | | ||| || | | Sbjct 310837 TGCTGTACAAATACATTGTTCAAAAGCCTGCAAAGGATCGTGTGCTTGCCATCATTAAGG 310778 Query 58186 AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTA 58245 ||||||| | || ||| | ||||| | | || || | || ||| || | |||| Sbjct 310777 AGGCGGTAGAAATAGAACAAAAGTTTCTTTCGGATGCTTTGCCAGTGAGTTTGATTGGTA 310718 Query 58246 TGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAAC 58305 ||||| | ||||||| ||||| || || | || ||| | || ||| | ||| Sbjct 310717 TGAACTGCAAGTTGATGTGTCGCTACATCGAATTCATCGCGGACCGGCTGTTGGTTGAAT 310658 Query 58306 TG 58307 || Sbjct 310657 TG 310656 >seq1867 Length=410790 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || |||||| | || |||||| | | Sbjct 315463 ATGCAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAAGC 315404 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || || |||||||||||| | || || |||||| Sbjct 315403 GATACCATTGAGAATGTAAAGGCGAAGATTCAAGACAAGGAAGGCATCCCACCTGACCAG 315344 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || || |||||||| | |||||| | ||| || |||||| ||| Sbjct 315343 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAAC 315284 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||||||||| ||||| |||||||| ||| | ||| | || || Sbjct 315283 ATCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGTCTGCGTGGTGG 315237 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| || || ||||||||| | || |||||| | Sbjct 315236 CATGCAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAG 315177 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | || || || || ||||| |||||| | || || ||||| Sbjct 315176 CGATACCATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGCATCCCACCTGACCA 315117 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || || || |||||||| | |||||| | ||| || |||||| || Sbjct 315116 GCAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAA 315057 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| ||||||||||| ||||| |||||||| ||| Sbjct 315056 CATCCAAAAAGAATCCACTCTCCATCTGGTGCTT 315023 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||| ||||| || |||||| |||| || || | Sbjct 291656 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291597 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| || || || ||||||||| | || || |||||| Sbjct 291596 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291537 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || |||||||||||||| ||||||||| | || || || || ||| Sbjct 291536 CAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAAC 291477 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| || ||||| || || ||| | || | || |||| Sbjct 291476 ATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGCCTTCGCGGTGGTA 291428 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||| ||||| || |||||| |||| || || | Sbjct 291884 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291825 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| || || || ||||||||| | || || |||||| Sbjct 291824 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291765 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || |||||||||||||| ||||||||| | || || || || ||| Sbjct 291764 CAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAAC 291705 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| || ||||| || || ||| | || | || |||| Sbjct 291704 ATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGCCTTCGCGGTGGTA 291656 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || ||||| | || || || | | Sbjct 292340 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACTATCACTCTTGAGGTCGAGGCTAGC 292281 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| || || || ||||||||| | || || |||||| Sbjct 292280 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 292221 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || |||||||||||||| ||||||||| | || || || || ||| Sbjct 292220 CAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAAC 292161 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| || ||||| || || ||| | || | || |||| Sbjct 292160 ATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGCCTTCGCGGTGGTA 292112 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||| ||||| || |||||| |||| || || | Sbjct 292112 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 292053 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| || || || ||||||||| | || || |||||| Sbjct 292052 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291993 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || |||||||||||||| | || ||| | || || || || ||| Sbjct 291992 CAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACATTGTCTGACTACAAC 291933 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| || ||||| || || ||| | || | || |||| Sbjct 291932 ATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGCCTTCGCGGTGGTA 291884 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||| ||||| || |||||| |||| || || | Sbjct 291428 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291369 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| || || || ||||||||| | || || |||||| Sbjct 291368 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291309 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || |||||||||||||| | || ||| | ||| || ||||| ||| Sbjct 291308 CAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACTTTGTCTGATTACAAC 291249 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || ||||| || ||| | || |||| Sbjct 291248 ATCCAGAAAGAGTCTACTTTGCACTTGGT 291220 >seq1332 Length=523337 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || || || || || || || || ||||| | || || || | Sbjct 494216 CATGCAAATTTTTGTTAAAACGCTAACCGGAAAGACTATCACTCTGGAGGTCGAGGCTAG 494157 Query 31252 CGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | |||| |||| | || | ||| | | | ||||| ||| | || || || | Sbjct 494156 TGATACGATCGAGAACGTTAAAGCTAAGATTCAAG-ATAAGGAGGGCATTCCTCCAGATC 494098 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||| | || || || ||||| |||||||||||| | ||| | ||||| | Sbjct 494097 AGCAGCGTTTGATTTTTGCAGGCAAGCAGTTGGAAGACGGTCGCACTCTCTCTGATTACA 494038 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 |||||||||| ||||| ||||||||| |||| || | || | |||||| || Sbjct 494037 ACATTCAAAAGGAATCCACTCTTCATTTGGTGCTCCGTTTGCGTGGCGGTTGA 493985 >seq2115 Length=135315 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || |||| ||| || | |||||||||||| || || ||||||| || || | || Sbjct 40303 TCCACTCGTCGCATGAAGATATCCGGTATCCAGAGGGCATAGAACAAGTCTCGACCACGA 40362 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 | || || || || || ||| || || | || | | ||||||| ||||||| Sbjct 40363 ATTTCTTCGGCACCAGTATTTTTTCGCATTTCAATGAACTGAAGGACGTCCGGATGCCAC 40422 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 || || ||||| ||||| || || || || | ||||| ||||| || |||| ||| || Sbjct 40423 GGTTCCAGGTAGACGGCGAAAGCACCGGGGCGTTTATTTCCGCCTTGGTCGATGTAGCGA 40482 Query 23522 GCCGTGTTGTTGTACAC 23538 || ||||| || |||| Sbjct 40483 GCAGTGTTATTAAACAC 40499 >seq1873 Length=396352 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || || || || || || | || |||||| | Sbjct 292486 AAGATGCAGATCTTCGTCAAGACACTCACGGGAAAGACTATTACGCTTGAGGTTGAAGCA 292545 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||||| |||||| | || ||||||||||| | || || || Sbjct 292546 TCGGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAAGGGATCCCTCCAGAT 292605 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || || | || ||||| || || || |||| ||| ||| | ||||| Sbjct 292606 CAACAACGATTGATTTTCGCGGGAAAGCAACTGGAGGACGGCCGTACTCTTTCTGATTAC 292665 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| |||||||| || | |||||||| || |||| ||||| || Sbjct 292666 AACATTCAGAAAGAATCCACCTTGCATCTGGTTCTGCGACTCAGGGGTGG 292715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445742172596160