Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1456 111 3e-19 seq2115 89.7 1e-12 >seq1456 Length=366961 Score = 111 bits (122), Expect = 3e-19 Identities = 241/360 (67%), Gaps = 3/360 (1%) Strand=Plus/Minus Query 101903 TTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTC 101962 || ||||| | || ||||||||||||||||| || || || ||||| ||| ||| Sbjct 311000 TTTGCGGAGCGTATAGTTGCCTTTGCTGCAGTCGAGGGTATTTTCTTCTCTGGCAGCTTC 310941 Query 101963 GCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAG 102022 || | || || ||| | || || | ||| | ||||||| | || | | |||||| Sbjct 310940 GCCGCAATATTTTGGCTGAAAAAACGCGGTTTGATGCCTGGGTTAACATTCAGCAATGAA 310881 Query 102023 TTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGT 102082 | || |||||| || ||||| || ||||||| || ||| |||||| ||| | Sbjct 310880 CTGATCAGTAGGGATGAGGGTCTACACTGCGACTTCGCCTGCTTGCTGTACAAATA---C 310824 Query 102083 TTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATT 102142 ||||| | | || ||| || | | |||| || | | || || || ||| Sbjct 310823 ATTGTTCAAAAGCCTGCAAAGGATCGTGTGCTTGCCATCATTAAGGAGGCGGTAGAAATA 310764 Query 102143 GAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTG 102202 |||||| | ||||| | | | | |||| || | || | || ||||||||||||||| Sbjct 310763 GAACAAAAGTTTCTTTCGGATGCTTTGCCAGTGAGTTTGATTGGTATGAACTGCAAGTTG 310704 Query 102203 ATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAG 102262 ||| | | ||||| ||||| | || || || ||||||||| |||||| |||||| Sbjct 310703 ATGTGTCGCTACATCGAATTCATCGCGGACCGGCTGTTGGTTGAATTGGGACATGAAAAG 310644 >seq2115 Length=135315 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 94785 GCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACC 94844 ||||| ||||| ||| ||||||||||||| || ||| || || || ||||||||||| Sbjct 41817 GCCGATACCTCCCGCATTCTTGGAGATGATAGCACACTCTTTGAGTGTGTCATAAATACC 41876 Query 94845 CTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGT 94904 ||||| || || |||| | | ||||| || ||| | ||| ||| || || Sbjct 41877 TTCAATACTGTCGTCTTTCATTGTGATCAGGAAACAGCTGGACATTTGCGGTCTGGTAGT 41936 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAG 94958 |||| |||||||| || || ||||||||||| || | | | |||||| || Sbjct 41937 ACCACTGTTAAACAGGGTCGGTGAAGCATGGGTGAACCATTTCTCCGACATTAG 41990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989528871512340