Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1456 156 5e-33 seq2115 86.0 8e-12 >seq1456 Length=366961 Score = 156 bits (172), Expect = 5e-33 Identities = 432/662 (65%), Gaps = 43/662 (6%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || ||||| |||||||| |||||||| || ||||| || | ||| || | Sbjct 310832 ACAGCAAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGA 310891 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || | || ||||| | || || ||||| ||||||||||| | ||||| || | Sbjct 310892 ATGTTAACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAG 310951 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG- 33752 | ||||| || || || |||||||||||||||| | | ||| || ||| || Sbjct 310952 AGAAGAAAATACCCTCGACTGCAGCAAAGGCAACTATACGCTCCGCA-AACGTAGAATGA 311010 Query 33753 ---TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 ||| ||||| || | ||||| | ||||||| ||||| | ||| || Sbjct 311011 GTATCACCAATCCAGTTGAGCGCCCATTGCGCCTTCTGCGCGACACACTCTAG-GTTGCT 311069 Query 33810 -ATGGCATTAAAGAG---AT-------AGttt-------tt---------ttCATTACT- 33841 ||||| || || || || || | || ||| |||| Sbjct 311070 GATGGCGTTGAACAGGAAATCCCTGCGAGAATACACAAATTAAAATAAGATTCCTTACCG 311129 Query 33842 ---------ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 |||||| | ||| || || |||| ||| |||||| || ||||| ||||| Sbjct 311130 TTCTGTTGGATCTTTGATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTT 311189 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || ||||| ||||| | || || ||||| | |||| | || || |||||| || Sbjct 311190 CTCGATGGCGATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTGACT 311249 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 || || || | ||||| || ||||||||||||||| || ||||| || || || || Sbjct 311250 GAAACGCTCGACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACAC 311309 Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 34072 || | || || | |||| | | || ||||||| ||| | | ||| || || Sbjct 311310 ATATGAGATGAAGTGACGTTCGCCGACCTTGAGACTATTCCAGTCACTAAAATCCTTGGA 311369 Query 34073 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 | ||| || || || || |||||||| ||||| |||| || ||||| | | ||| | Sbjct 311370 GAGATCGACCTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAAC 311429 Query 34133 GTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATAGGTTC 34192 || || |||||||| ||||| | |||||||| || ||| || ||| | | |||||| Sbjct 311430 ATCGTGGTATTGGATGGGGAATAGAACAAATCGATGTGGGTTCGGTTTCAACAGAGGTTC 311489 Query 34193 CA 34194 || Sbjct 311490 CA 311491 >seq2115 Length=135315 Score = 86.0 bits (94), Expect = 8e-12 Identities = 173/254 (68%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 |||||||| | ||| ||| | || ||| || | | ||| ||||||| ||| ||| Sbjct 40261 GGACATTCGTGTGGATCCATGAGCGTCCAATCCTCATTGGCCTCCACTCGTCGCATGAAG 40320 Query 63282 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 | ||| || ||||| || || ||| || | |||| | | ||| ||| || || Sbjct 40321 ATATCCGGTATCCAGAGGGC-ATAGAACAAGTCTCGACCACGAATTTCTTCGGCACCAGT 40379 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||| ||| | || | |||| | | || | |||||||||||||| ||| | ||| Sbjct 40380 ATTTTTTCGCATTTCAATGAACTGAAGGACGTCCGGATGCCACGGTTCCAGGTAGACGGC 40439 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | || || ||||| ||||| || || || ||||| | ||| ||||||||| | || Sbjct 40440 GAAAGCACCGGGGCGTTTATTTCCGCCTTGGTCGATGTAGCGAGCAGTGTTATTAAACAC 40499 Query 63461 TCTCAACATTGGAA 63474 | |||||| |||| Sbjct 40500 ACGCAACATGGGAA 40513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629783369413440