Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1456 143 4e-29 seq2115 87.8 2e-12 >seq1456 Length=366961 Score = 143 bits (158), Expect = 4e-29 Identities = 413/634 (65%), Gaps = 41/634 (6%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || ||||| ||||||||||||||||| || ||||| || | ||| ||| | Sbjct 310832 ACAGCAAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGA 310891 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269 | || | || ||||| | || || ||||| ||||||||||| | || || |||| Sbjct 310892 ATGTTAACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAG 310951 Query 36270 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG- 36328 | |||||||| || || ||||| |||||||||| | | ||| || ||| | || Sbjct 310952 AGAAGAAAATACCCTCGACTGCAGCAAAGGCAACTATACGCTCCGCA-AACGTAGAATGA 311010 Query 36329 ---TCATGTATCCACTTTTGAGCCCAATCGGCCTTCT-----------TTT---TTACAC 36371 ||| ||||| || | ||||| | ||||||| | | || | Sbjct 311011 GTATCACCAATCCAGTTGAGCGCCCATTGCGCCTTCTGCGCGACACACTCTAGGTTGCTG 311070 Query 36372 AAGGCATTG---------TCTCT------ATA---GCATTAAA--GAGATAGttt--ttt 36409 | ||| ||| || || ||| |||||| |||| || | Sbjct 311071 ATGGCGTTGAACAGGAAATCCCTGCGAGAATACACAAATTAAAATAAGATTCCTTACCGT 311130 Query 36410 tCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 36469 || | |||||| | |||||| ||||||| ||| |||||| || ||||| ||||| Sbjct 311131 TCTGTTGGATCTTTGATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTTC 311190 Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 36529 || ||||| || || | || || ||||| | |||| | || || |||||| || Sbjct 311191 TCGATGGCGATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTGACTG 311250 Query 36530 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 36589 || || || | ||||| || ||||||||| ||||| || ||||| || || || ||| Sbjct 311251 AAACGCTCGACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACACA 311310 Query 36590 TGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 36649 | | || || | |||| | || ||||||| ||| | | ||| || || Sbjct 311311 TATGAGATGAAGTGACGTTCGCCGACCTTGAGACTATTCCAGTCACTAAAATCCTTGGAG 311370 Query 36650 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 36709 | ||| || || || || |||||||| ||||| |||| || ||||| | | ||| | Sbjct 311371 AGATCGACCTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACA 311430 Query 36710 TCATGATATTGAATTGGAAAAATAACAAATCTAT 36743 || || ||||| || || || | |||||||| || Sbjct 311431 TCGTGGTATTGGATGGGGAATAGAACAAATCGAT 311464 >seq2115 Length=135315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 177/260 (68%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 66009 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 66068 || || |||||||| | ||| ||| | || ||| || | | ||| ||||||| | Sbjct 40255 AAACCTGGACATTCGTGTGGATCCATGAGCGTCCAATCCTCATTGGCCTCCACTCGTCGC 40314 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTT 66127 || |||| ||| || ||||| || || ||| || || |||| | | ||| ||| Sbjct 40315 ATGAAGATATCCGGTATCCAGAGGGC-ATAGAACAAGTCTCGACCACGAATTTCTTCGGC 40373 Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 || ||||| ||| | || | |||| | | || |||||||||||||| ||| Sbjct 40374 ACCAGTATTTTTTCGCATTTCAATGAACTGAAGGACGTCCGGATGCCACGGTTCCAGGTA 40433 Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 | ||| | | | || || ||||| ||||| || || || ||||| | ||| |||||||| Sbjct 40434 GACGGCGAAAGCACCGGGGCGTTTATTTCCGCCTTGGTCGATGTAGCGAGCAGTGTTATT 40493 Query 66248 ATAAACTCTCAACATTGGAA 66267 | | || | |||||| |||| Sbjct 40494 AAACACACGCAACATGGGAA 40513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658137028308320