Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq1097 282 1e-71 >seq1097 Length=3195 Score = 282 bits (312), Expect = 1e-71 Identities = 257/318 (81%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 21596 TTTGATGTGCTTTCTCTTCAAGCCACCTGACACACGCTTCCTCGAACGTTATATCAGGTA 21655 ||| || ||||| || |||||||| || | || || || || || || | |||||||| Sbjct 1 TTTTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTA 60 Query 21656 TTTCACCAAG-TTTGCTGACCCGCCATGCTTCAGCCTTTAGCTTGTCATGGAGTTCTGTC 21714 || || || ||| || || ||||| ||| || ||| ||||||| || | || Sbjct 61 AATCCCCTAGCTTTTCT-ACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGA 119 Query 21715 GCCTGCCTTTTGTCCTTTGTTCCAAGAGACTGTTTAAATCTTTTACCGTTCGGCAATGTG 21774 || |||| |||||||||||| |||||||| | |||| || ||| ||| ||| | | | Sbjct 120 GCTTGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGA--GCG 177 Query 21775 AA-AC-TGGCGTACCATATTTCACCTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTAT 21832 || || ||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 178 AATACGAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTAT 237 Query 21833 GCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGAGCCGCAATGCAGGC 21892 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 238 GCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGC 297 Query 21893 TTGTCGTGTTGTGAGGTA 21910 ||| |||||||||||||| Sbjct 298 TTGCCGTGTTGTGAGGTA 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118509080763936