Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1867 109 5e-19 seq1332 98.7 1e-15 >seq1867 Length=410790 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| ||||| | ||||||||||| || ||||| ||||| || || | | Sbjct 291214 CGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCG 291273 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || || ||||| ||||| | || || |||||||| || || || |||||||| || Sbjct 291274 TCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 291333 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | || | |||||| ||| ||| ||||| | ||| | Sbjct 291334 TC-TTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGAT 291392 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| |||| ||| || || || || |||||| Sbjct 291393 AGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCATA 291429 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GTCTTCGAGCTGTTTAC 139625 || || |||||||| ||||| |||||| || || |||| |||||| || ||||| | Sbjct 315039 GTGGATTCTTTTTGGATGTTGTAATCGGACAGAGT--TCGACCGTCTTCAAGTTGTTTGC 315096 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-T 139684 | ||| | |||| ||| ||||| || || || |||||||||||||| ||| | || | Sbjct 315097 CGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTC-TTGAATCTTCGCC 315155 Query 139685 TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744 || | | || | || ||| | | || || |||| ||| | |||||| ||||||| Sbjct 315156 TTCACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTACCGGTCAGG 315215 Query 139745 GTTTTTACGAATATTTGCAT 139764 || || || ||||| ||||| Sbjct 315216 GTCTTCACAAATATCTGCAT 315235 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GTCTTCGAGCTGTTTAC 139625 || || |||||||| ||||| |||||| || || |||| |||||| || ||||| | Sbjct 315267 GTGGATTCTTTTTGGATGTTGTAATCGGACAGAGT--TCGACCGTCTTCAAGTTGTTTGC 315324 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT- 139684 | ||| | |||| ||| ||||| || || || |||||||| ||||| ||| | || | Sbjct 315325 CGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT-TGAATCTTCGCC 315383 Query 139685 TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744 |||| | || | || ||| | | || || |||| ||| | ||||| || || | Sbjct 315384 TTTACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATGGTCTTCCCAGTAAGT 315443 Query 139745 GTTTTTACGAATATTTGCATAGCTTAT 139771 || || |||||||||||||| ||| || Sbjct 315444 GTCTTCACGAATATTTGCATTGCTAAT 315470 >seq1332 Length=523337 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || ||||| | || || |||| || || || ||||||||||| ||||| Sbjct 493989 CCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 494048 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | ||| || || ||| | |||| ||| |||||||| ||||| Sbjct 494049 AGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGA 494108 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| | || | |||| | | || | || || | | ||| || Sbjct 494109 ATGCCCTCCTTATC-TTGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGAC 494167 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| ||||| | |||||| || || |||||||| Sbjct 494168 CTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | || | ||| | ||| | ||||||||||||||| ||||| || || Sbjct 494216 GCCACCGCGAAGTCGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTGA 494275 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||| | || || || ||| | ||||||||||| || ||||| || Sbjct 494276 GAGAGTGCGTCCGTCTTCCAATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTGG 494335 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| |||| | || | | ||| | || || | | || | Sbjct 494336 AATCCCTTCCTTATC-CTGAATTTTCGCCTTGACATTTTCGATGGTATCACTTGATTCGA 494394 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | || || || ||||| ||||| |||||||| ||||| Sbjct 494395 CTTCCAAAGTTATGGTTTTCCCTGTCAATGTTTTGACGAATATCTGCAT 494443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496037038921600