Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1456 163 4e-35 >seq1456 Length=366961 Score = 163 bits (180), Expect = 4e-35 Identities = 423/645 (66%), Gaps = 41/645 (6%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || ||||| |||||||| |||||||| || ||||| || ||||| ||| | Sbjct 310832 ACAGCAAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGA 310891 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | || | || ||||| | || || ||||| ||||||||||| | || || |||| Sbjct 310892 ATGTTAACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAG 310951 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGC 50128 | ||||| || || || ||||| ||||||||||| | | ||| || | | | Sbjct 310952 AGAAGAAAATACCCTCGACTGCAGCAAAGGCAACTATACGCTCCGCAAACGTAGAATGAG 311011 Query 50129 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT- 50187 | ||| ||||| || | ||||| | ||||||| |||| | | ||| || Sbjct 311012 TATCACCAATCCAGTTGAGCGCCCATTGCGCCTTCTGCGCGACAC-ACTCTAGGTTGCTG 311070 Query 50188 ATGGCATTAAA---GAGAT-------AGttt-------tt---------ttCATTAC--- 50218 ||||| || || || || || | || ||| |||| Sbjct 311071 ATGGCGTTGAACAGGAAATCCCTGCGAGAATACACAAATTAAAATAAGATTCCTTACCGT 311130 Query 50219 -------TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 50271 |||||| | ||| || || |||| ||| |||||| || ||||| ||||| Sbjct 311131 TCTGTTGGATCTTTGATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTTC 311190 Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 || ||||| ||||| | || || ||||| | |||| | || || |||||| || Sbjct 311191 TCGATGGCGATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTGACTG 311250 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 || || || | ||||| || ||||||||| ||||| || ||||| || || || ||| Sbjct 311251 AAACGCTCGACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACACA 311310 Query 50392 TGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 50451 | | || || || |||| | | || ||||||| ||| | | ||| || || Sbjct 311311 TATGAGATGAAGTGACGTTCGCCGACCTTGAGACTATTCCAGTCACTAAAATCCTTGGAG 311370 Query 50452 ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 50511 | ||| || || || || |||||||| ||||| |||| || ||||| | | ||| | Sbjct 311371 AGATCGACCTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACA 311430 Query 50512 TCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 50556 || || |||||||| ||||| | |||||||| || ||| || ||| Sbjct 311431 TCGTGGTATTGGATGGGGAATAGAACAAATCGATGTGGGTTCGGT 311475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718229762090720