Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1456 120 3e-22 >seq1456 Length=366961 Score = 120 bits (132), Expect = 3e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || || || || || || || |||||||| ||||| || ||||| || |||||| Sbjct 310837 AAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGAATGTT 310896 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 || || |||||||| || |||||||| | |||||||||||| ||||| || || ||| Sbjct 310897 AACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAG 310956 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACG 13822 || || ||||| ||||||||||| || | || || || |||||| Sbjct 310957 AAAATACCCTCGACTGCAGCAAAGGCAACTATACGCTCCGCAAACG 311002 Score = 84.2 bits (92), Expect = 2e-11 Identities = 186/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 || ||||| ||||| || | |||||| || || |||||||| || || || ||||| Sbjct 311146 ATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTTCTCGATGGCGATCTGC 311205 Query 13990 AAACCATAAAAACATC-TAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCA 14047 | ||||||||||| | | || | || | ||| || || || | ||| | || ||| Sbjct 311206 ATCCCATAAAAACACCGGACCTCCGGAAC-TTGAACTTCTTGACTGAAA-CGCTCGACCA 311263 Query 14048 AGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14107 | || || || || |||||||| || ||||| || || || | | | || |||| Sbjct 311264 AATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACACATATGAGATGAAGT 311323 Query 14108 ATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCAT 14167 | || | ||||| | ||||| || |||||||| || ||||| || || | Sbjct 311324 GACGTTCGCCGACCTTGAGACTATTCCAGTCACTAAAATCCTTGGAGAGATCGACCTCCT 311383 Query 14168 CAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 |||| |||||||| ||||| ||||| ||||| Sbjct 311384 CAACGGTCCAAAACGATGCGACTGCTTTCTTATA 311417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478562788698720