Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1456 176 6e-39 >seq1456 Length=366961 Score = 176 bits (194), Expect = 6e-39 Identities = 429/647 (66%), Gaps = 45/647 (7%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || ||||| |||||||| ||||||||||| ||||| || | ||| ||| | Sbjct 310832 ACAGCAAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGA 310891 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | || | || ||||| | || || ||||| ||||||||||| | || || |||| Sbjct 310892 ATGTTAACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAG 310951 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG- 42235 | ||||| || || || ||||| |||||||||| | | ||| || ||| | || Sbjct 310952 AGAAGAAAATACCCTCGACTGCAGCAAAGGCAACTATACGCTCCGCA-AACGTAGAATGA 311010 Query 42236 ---TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 ||| ||||| || | ||||| | ||||||| |||| | | ||| || Sbjct 311011 GTATCACCAATCCAGTTGAGCGCCCATTGCGCCTTCTGCGCGACAC-ACTCTAGGTTGCT 311069 Query 42293 -ATGGCATTAAA---GAGAT-------AGttt-------tt---------ttCATTAC-- 42323 ||||| || || || || || | || ||| |||| Sbjct 311070 GATGGCGTTGAACAGGAAATCCCTGCGAGAATACACAAATTAAAATAAGATTCCTTACCG 311129 Query 42324 --------TATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 |||||| | |||||| || |||| ||| |||||| |||||||| ||||| Sbjct 311130 TTCTGTTGGATCTTTGATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTT 311189 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435 || ||||| ||||| | || || ||||| | | |||| | ||| || |||||| || Sbjct 311190 CTCGATGGCGATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTGACT 311249 Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495 || || || | ||||| || ||||||||| ||||| || ||||| || || || || Sbjct 311250 GAAACGCTCGACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACAC 311309 Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTCCAATCATTGATATCTTTAG 42554 || | || || | |||| ||| || | ||||||| ||| | | ||| || | Sbjct 311310 ATATGAGATGAAGTGACGTTCG-CCGACCTTGAGACTATTCCAGTCACTAAAATCCTTGG 311368 Query 42555 ATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGA 42614 | | ||| || || || || |||||||| ||||| |||| || ||||| | | ||| | Sbjct 311369 AGAGATCGACCTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAA 311428 Query 42615 TATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGT 42661 ||| || ||||| || ||||| | |||||||| || ||| || ||| Sbjct 311429 CATCGTGGTATTGGATGGGGAATAGAACAAATCGATGTGGGTTCGGT 311475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671102723584480