Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq1110 291 2e-74 >seq1110 Length=2318 Score = 291 bits (322), Expect = 2e-74 Identities = 293/380 (77%), Gaps = 12/380 (3%) Strand=Plus/Plus Query 38077 CATTACCGCGACAACGCCATTCAGTATAAATCGCAGCGTGATACC---GCCAGTCATAGT 38133 |||||||| || ||||||||| || ||| | ||||| || | ||||| | Sbjct 1681 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA--- 1737 Query 38134 CTGACGCTGGCGAACGAGACTATCAGCGATATGGAGGTGCGCCAGCGTGACGTTGCCGCC 38193 |||| ||||||||||| | | || | || ||| || |||| |||||||| ||||| || Sbjct 1738 CTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCG 1797 Query 38194 CTTGATGCAAGATATACAAAGGAGCTCGCTGATGCGAAAGCTGAGAATGATGCTTTGCGC 38253 || ||||||| ||| || |||||| | ||||||||||||||||| ||||||||| |||| Sbjct 1798 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGT 1857 Query 38254 GATGATGTCGCCGCTGGCCGTCGTCGCCTGCTCGTCAACGCCACCTGTCCCGCAGTGTCG 38313 |||||||| |||||||| |||||||| ||| | |||| || ||||| ||||| Sbjct 1858 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTG--- 1914 Query 38314 ACAGGTAAATCCACCTCCGCCGCCCGCGTGGATAATGCAGCCCGCCCCAGACTGGCAGAC 38373 || || ||||| ||||| || ||||||||||||||||| |||| ||||||||||| Sbjct 1915 ---CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGAC 1971 Query 38374 TCCGCTCAACGGGATTATTTCACCCTCAAAGAGCGAGTGACAACAATGCAAAAGCAACTG 38433 ||||| ||||||||||||||||||||| |||| | ||| || |||||||| |||||| Sbjct 1972 ACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTG 2031 Query 38434 GAAGGGGCGCAGGACTATAT 38453 ||||| | ||| | ||||| Sbjct 2032 GAAGGAACCCAGAAGTATAT 2051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128348572700136