Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1867 138 8e-28 seq1332 129 4e-25 seq1873 98.7 7e-16 >seq1867 Length=410790 Score = 138 bits (152), Expect = 8e-28 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| |||||||| |||||||||||| ||| ||| ||||||| | ||| Sbjct 315032 ATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTCAAGTTG 315091 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | |||||||| || ||||| ||| || ||||||||||| ||| || Sbjct 315092 TTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTGAATCTT 315151 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || ||||||||||| ||| || || | ||| || || ||||| || Sbjct 315152 CGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTACCGGT 315211 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| || ||||| Sbjct 315212 CAGGGTCTTCACAAATATCTGCAT 315235 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| |||||||| |||||||||||| ||| ||| ||||||| | ||| Sbjct 315260 ATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTCAAGTTG 315319 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | |||||||| || ||||| ||| || ||||| ||||| ||| || Sbjct 315320 TTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGAATCTT 315379 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||||||| | || ||||||||||| ||| || || | ||| ||||| || || || Sbjct 315380 CGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATGGTCTTCCCAGT 315439 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||| Sbjct 315440 AAGTGTCTTCACGAATATTTGCAT 315463 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 |||| |||||||| || ||||| || |||||||| || | ||| || |||||| Sbjct 291448 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAG--ACAATGTACGACCGTCTT 291505 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | ||||||||||||||| | || | ||||| ||||| ||| || ||||| || || Sbjct 291506 CCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTT 291565 Query 15273 AAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| || ||| || || | || || || || || || || || | ||| || || Sbjct 291566 GAATCTTCGCT-TTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTC 291624 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||||| |||||| Sbjct 291625 TTGCCAGTCAGCGTCTTCACAAAAATCTGCATA 291657 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 |||| |||||||| || ||||| || |||||||| || | ||| || |||||| Sbjct 291676 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAG--ACAATGTACGACCGTCTT 291733 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | ||||||||||||||| | || | ||||| ||||| ||| || ||||| || || Sbjct 291734 CCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTT 291793 Query 15273 AAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| || ||| || || | || || || || || || || || | ||| || || Sbjct 291794 GAATCTTCGCT-TTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTC 291852 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||||| |||||| Sbjct 291853 TTGCCAGTCAGCGTCTTCACAAAAATCTGCATA 291885 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 |||| |||||||| || ||||| || |||||||| || | ||| || |||||| Sbjct 292132 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAG--ACAATGTACGACCGTCTT 292189 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | ||||||||||||||| | || | ||||| ||||| ||| || ||||| || || Sbjct 292190 CCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTT 292249 Query 15273 AAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| || ||| || || | || || || |||||| || || || | || || || Sbjct 292250 GAATCTTCGCT-TTCACGTTCTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATAGTC 292308 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || ||||| || ||||| Sbjct 292309 TTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 |||| |||||||| || ||||| || |||||||| || | ||| || |||| | Sbjct 291904 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAG--ACAATGTACGACCGTCCT 291961 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 ||| ||||||||||||| | || | ||||| ||||| ||| || ||||| || || Sbjct 291962 CTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTT 292021 Query 15273 AAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| || ||| || || | || || || || || || || || | ||| || || Sbjct 292022 GAATCTTCGCT-TTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTC 292080 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||||| |||||| Sbjct 292081 TTGCCAGTCAGCGTCTTCACAAAAATCTGCATA 292113 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || || | || || ||||| || ||||||||||| | | | | |||| Sbjct 291217 AAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCGTCC 291276 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 |||| ||||||||||||| | || | ||||| ||||| ||| || ||||| || || Sbjct 291277 TCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 291336 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| || || | || || || || || || || || | ||| || || Sbjct 291337 TGAATCTTCGCT-TTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGT 291395 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||||| |||||| Sbjct 291396 CTTGCCAGTCAGCGTCTTCACAAAAATCTGCATA 291429 >seq1332 Length=523337 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | || | ||| | || || || || |||||||| |||||||| || Sbjct 494215 TGCCACCGCGAAGTCGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTG 494274 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | ||||||| ||||| || || || | |||| ||||||||||||| || Sbjct 494275 AGAGAGTGCGTCCGTCTTCCAATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTG 494334 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| || || |||||| ||| ||| |||| |||||||| || ||| | Sbjct 494335 GAATCCCTTCCTTATCCTGAATTTTCGCCTTGACATTTTCGATGGTATCACTTGATTCGA 494394 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || |||||||| ||||||| ||||| || || || ||||| Sbjct 494395 CTTCCAAAGTTATGGTTTTCCCTGTCAATGTTTTGACGAATATCTGCAT 494443 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| ||||| || ||||| ||||||||||| ||| | | ||||||| Sbjct 494007 ACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTCC 494066 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || ||||| || | |||||||| || || || ||||| || || || || | Sbjct 494067 AACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTGA 494126 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || || | || || ||||| ||| || || || | || || || || Sbjct 494127 ATCTTAGCT-TTAACGTTCTCGATCGTATCACTAGCCTCGACCTCCAGAGTGATAGTCTT 494185 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| |||||||||||||| Sbjct 494186 TCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 >seq1873 Length=396352 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| || | || | ||| | ||| | |||||| ||||| || ||||||||||| Sbjct 292717 TGCCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAG 292658 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | |||| || | ||| || || ||| | ||||| |||||||| || | Sbjct 292657 AAAGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAG 292598 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCT 15313 | || ||||| ||||| ||| ||| || ||| |||| |||||||| | || ||| Sbjct 292597 GGATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATC-CGATGCTTCA 292539 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || | ||||| || || || || || || || || || || ||||| || Sbjct 292538 ACCTCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 292486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362160007671468