Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq1097 648 0.0 seq1110 394 3e-105 seq1131 165 3e-36 >seq1097 Length=3195 Score = 648 bits (718), Expect = 0.0 Identities = 383/399 (96%), Gaps = 0/399 (0%) Strand=Plus/Plus Query 13042 TACGAGTATTGCCGGAAGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCG 13101 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 618 TACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCG 677 Query 13102 AACGCGCACTACTGGCTGGTTACCAACCTGTACCAGAACATGCGGGCCAATGCGCTGACT 13161 |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| || Sbjct 678 AACGCGCATTACTGGTTGGTTACCAACTTGTACCAGAACATGCGGGCCAATGCGCTGGCT 737 Query 13162 GACGCGGAATTACGACGCAAGGCTGCCGATGAACTGACCTGTATGACAGCGCGAATTAAC 13221 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 738 GACGCGGAATTACGGCGCAAGGCTGCCGATGAACTGACCTGTATGACAGCGCGAATTAAC 797 Query 13222 CGTGGTGAGACGATACCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGCAGACCTCTA 13281 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 798 CGTGGTGAGACGATACCTGAACCAGTAAAACAACTTCCTGTTATGGGCGGTAGACCTCTA 857 Query 13282 AATCGTGTTCAGGCGCTGGCGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGA 13341 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 858 AATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGA 917 Query 13342 GCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAATAGCTTCT 13401 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 918 GCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCT 977 Query 13402 GTGCGCCGGACGTTGCCGCGCTAACAGGCGCAACAGTAA 13440 |||| | ||||||||||||| ||||||||||||| |||| Sbjct 978 GTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAA 1016 Score = 508 bits (562), Expect = 2e-139 Identities = 296/306 (97%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 4602 TACGCGGATATTATCGTGAGGATGCTTCATCGCCATTGCTCCCCAAATACAAAACCAATT 4661 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 314 TACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATT 373 Query 4662 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 4721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 433 Query 4722 ATGTAATTTTCATCCCGCTCAACCACGACATAATGCAGGCCTTCACGCTTCATTCGTGGG 4781 ||||| ||||||| |||||||| |||||||||||||||||||||||||||||| || ||| Sbjct 434 ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGG 493 Query 4782 TCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGG 4841 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 494 TCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGG 553 Query 4842 GCCATGTAAGCCGATTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGG 4901 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 554 GCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGG 613 Query 4902 GAGGTA 4907 |||||| Sbjct 614 GAGGTA 619 >seq1110 Length=2318 Score = 394 bits (436), Expect = 3e-105 Identities = 315/377 (84%), Gaps = 3/377 (1%) Strand=Plus/Plus Query 25924 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 25983 || ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 1678 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 1737 Query 25984 CTGGAACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCG 26043 ||| | | |||||| || | |||||||| |||||| |||| |||||||||||||||||| Sbjct 1738 CTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCG 1797 Query 26044 CTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 26103 ||||||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||||| Sbjct 1798 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGT 1857 Query 26104 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGCATCAACGCCACCTGCTCCGGTACCGTG 26163 | ||||||||||||||||||| || ||| |||||| || ||| || | | ||| Sbjct 1858 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTG-TCAG--TCAGTG 1914 Query 26164 CGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACC 26223 |||||||||||| | |||||||||||||||||||| || ||||||||||||||||||| Sbjct 1915 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACC 1974 Query 26224 GCTGAACGGGATTATTTCATCCTCAGAGAACGGTTGATGACAATGCAGAAGCAGCTGGAA 26283 ||||||||||||||||||| ||||||||| || |||| || ||||| || || |||||| Sbjct 1975 GCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTGGAA 2034 Query 26284 GGGGCACAGGACTATAT 26300 || | ||| | ||||| Sbjct 2035 GGAACCCAGAAGTATAT 2051 >seq1131 Length=1733 Score = 165 bits (182), Expect = 3e-36 Identities = 121/141 (86%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 26772 CCGGCGGCAAGATTCAATGACCCACGCAGAAAAATTTTCTGAACCTTTCTGGTCAAGAGC 26831 ||| ||||| | |||||||||||| || || ||||| | || ||||| || |||||||| Sbjct 158 CCGACGGCAGGCTTCAATGACCCAGGCTGAGAAATTCCCGGACCCTTTTTGCTCAAGAGC 217 Query 26832 GATGTTAATTTGTTCAATCATCTGGTTTGGAAATCGGATGTTGCGGGTTGTTGTTCTGCG 26891 ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 218 GATGTTAATTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCG 277 Query 26892 GGGCCGGTTTTTCGATGACAT 26912 || | ||| |||| |||||| Sbjct 278 GGTTCTGTTCTTCGTTGACAT 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185244834852192