Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_004913.3 Length=59866 Score E Sequences producing significant alignments: (Bits) Value seq1110 911 0.0 seq1097 511 2e-140 >seq1110 Length=2318 Score = 911 bits (1010), Expect = 0.0 Identities = 590/644 (92%), Gaps = 3/644 (0%) Strand=Plus/Plus Query 57499 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 57558 || ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 1678 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 1737 Query 57559 CTGGAACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCG 57618 ||| | | |||||| || | |||||||| |||||| |||| |||||||||||||||||| Sbjct 1738 CTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCG 1797 Query 57619 CTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 57678 ||||||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||||| Sbjct 1798 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGT 1857 Query 57679 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAACGCCACCTGCTCCGGTACCGTG 57738 | ||||||||||||||||||| || ||| ||||| || ||| | || | ||| Sbjct 1858 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGT--CAGT-CAGTG 1914 Query 57739 CGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACC 57798 |||||||||||| | |||||||||||||||||||| || ||||||||||||||||||| Sbjct 1915 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACC 1974 Query 57799 GCTGAACGGGATTATTTCATCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTGGAA 57858 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1975 GCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTGGAA 2034 Query 57859 GGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGATGGGCAACT 57918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2035 GGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGATGGGCAACT 2094 Query 57919 CATGCAATTATTGTGAGCAATACACCCGCGCTTCCAGCGGAGTATAAATGCCTAAAGTAA 57978 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2095 CATGCAATTATTGTGAGCAATACACACGCGCTTCCAGCGGAGTATAAATGCCTAAAGTAA 2154 Query 57979 TAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTG 58038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2155 TAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTG 2214 Query 58039 TGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGA 58098 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2215 CGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGA 2274 Query 58099 AATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTG 58142 |||||||||||||||||||||||||||||||||||| | ||||| Sbjct 2275 AATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGCCGGTTTG 2318 >seq1097 Length=3195 Score = 511 bits (566), Expect = 2e-140 Identities = 297/306 (97%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 37690 TACCCGGATATTATCGTGAGGATGCTTCATCGCCATTGCTCCCCAAATACAAAACCAATT 37749 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 314 TACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATT 373 Query 37750 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 37809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 433 Query 37810 ATGTACTTTTCATCCCGCTCAACCACGACATAATGCAGGCCTTCACGCTTCATACGTGGG 37869 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 434 ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGG 493 Query 37870 TCATAGTTGGCAAAGTACCAGGCATCTTTTCGTGTCACCCACATGCTGTACTGCACCTGG 37929 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 494 TCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGG 553 Query 37930 GCCATGTAAGCCGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGG 37989 |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 554 GCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGG 613 Query 37990 GAGGTA 37995 |||||| Sbjct 614 GAGGTA 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191439714978528