Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1867 82.4 5e-11 >seq1867 Length=410790 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| ||| || ||| |||||||| || || |||||| | || | || || Sbjct 315026 CACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTC 315085 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||| || ||||| ||||| || |||||||| | || | |||||||| ||| Sbjct 315086 AAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTG 315145 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA-CATCGACCGTAATTGTTT 44090 ||| || || || | ||| ||||| || ||| || | || | || || || | Sbjct 315146 AATCTTCGCCTTCACATTCTCAATGGTATC-GCTTGCTTCAACTTCAAGGGTGATCGTCT 315204 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||||| | |||||||||||||| |||||| Sbjct 315205 TACCGGTCAGGGTCTTCACAAATATCTGCATG 315236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354758799891504