Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1867 100 2e-16 >seq1867 Length=410790 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| ||| || || ||||||||||| |||||||||||| || |||| | ||||| Sbjct 315026 CACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTC 315085 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||||||||| ||| |||| | | ||| || || || | |||||||||||| Sbjct 315086 AAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTG 315145 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || ||||| | ||| | ||||| | ||| ||| | ||| || || || Sbjct 315146 AATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTT 315205 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||| || || ||||| || ||||| Sbjct 315206 ACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| ||| || || ||||||||||| |||||||||||| || |||| | ||||| Sbjct 315254 CACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTC 315313 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||||||||| ||| |||| | | ||| || || || | |||||| ||||| Sbjct 315314 AAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 315373 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || || || | ||| | ||||| | ||| ||| | ||| ||||| || Sbjct 315374 AATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATGGTCTT 315433 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | || || || || ||||||||| Sbjct 315434 CCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419564965549788