Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1873 176 1e-38 seq1867 176 1e-38 seq1332 140 7e-28 seq1456 105 2e-17 >seq1873 Length=396352 Score = 176 bits (194), Expect = 1e-38 Identities = 180/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 104328 TTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387 |||| || || || || | || || ||||| || || |||||||||||||| || || | Sbjct 292720 TTATGCCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAAT 292661 Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| ||||| | ||||| || ||||| ||||| || ||||| | | |||||||| | Sbjct 292660 CAGAAAGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTG 292601 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 |||| || ||||| || || |||||||| ||||| |||||||| | |||||| | || Sbjct 292600 GAGGGATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTT 292541 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 | ||||| || ||||||||||| || || ||||| || || || |||||||| || Sbjct 292540 CAACCTCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 292486 >seq1867 Length=410790 Score = 176 bits (194), Expect = 1e-38 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || | ||| | ||| || ||||| | || |||||||| || || || || || || Sbjct 315009 CCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315068 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||||| ||||||||| |||||||| || |||||||| | | ||| || ||||| || Sbjct 315069 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315128 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| || |||||||| || || ||||| || | ||||||||| | ||| || Sbjct 315129 ATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACT 315188 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || |||||||| || || || || |||||||||||||| Sbjct 315189 TCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 174 bits (192), Expect = 4e-38 Identities = 167/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || |||||||| || || || || || || ||||||| |||||| Sbjct 315251 AAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTC 315310 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| || |||||||| | | ||| || ||||| || || ||||| || || Sbjct 315311 TTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTC 315370 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || |||||||| || | ||||||||| | ||| || || || || || || Sbjct 315371 TTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATGGT 315430 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| ||||||||||| || || ||||| |||||| Sbjct 315431 CTTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| ||||| || | |||||||||||||| || || |||||||| | || | |||||| Sbjct 292128 AAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTC 292187 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | |||||| ||||| ||||| || | || || ||||| || || ||||| ||||| Sbjct 292188 TTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATC 292247 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| ||||| || || || | || ||||||| || ||||| || || ||||| Sbjct 292248 TTGAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATAGT 292307 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTG 104565 ||| ||||| || || || ||||| |||||||| |||| Sbjct 292308 CTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCGTGTG 292346 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| ||||| || | |||||||||||||| || || |||||||| | || | |||||| Sbjct 291900 AAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTC 291959 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||||||||| ||||| ||||| || | || || ||||| || || ||||| ||||| Sbjct 291960 CTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATC 292019 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| ||||| || || || | || || || | || ||||| || || ||||| Sbjct 292020 TTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGT 292079 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || ||||| |||||||| Sbjct 292080 CTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| ||||| || | |||||||||||||| || || |||||||| | || | |||||| Sbjct 291444 AAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTC 291503 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | |||||| ||||| ||||| || | || || ||||| || || ||||| ||||| Sbjct 291504 TTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATC 291563 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| ||||| || || || | || || || | || ||||| || || ||||| Sbjct 291564 TTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGT 291623 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || ||||| |||||||| Sbjct 291624 CTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| ||||| || | |||||||||||||| || || |||||||| | || | |||||| Sbjct 291672 AAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTC 291731 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | |||||| ||||| ||||| || | || || ||||| || || ||||| ||||| Sbjct 291732 TTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATC 291791 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| ||||| || || || | || || || | || ||||| || || ||||| Sbjct 291792 TTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGT 291851 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || ||||| |||||||| Sbjct 291852 CTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||| |||||||| || || || ||||| | ||| | |||||| ||||||||| Sbjct 291226 TGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCGTCCTCTAGTTGT 291285 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| ||||| || | || || ||||| || || ||||| ||||| |||||||| Sbjct 291286 TTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTC 291345 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || || || | || || || | || ||||| || || |||||||| ||||| Sbjct 291346 GCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTC 291405 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| |||||||| Sbjct 291406 AGCGTCTTCACAAAAATCTGCAT 291428 >seq1332 Length=523337 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||| || || || ||||| || ||||| | |||||||| | ||| || || Sbjct 494247 GTAGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTGCGTCCGTCTTCCAATTGCTTCCCT 494306 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| || || || || ||||| ||||||||||| || || || Sbjct 494307 GCAAAAATCAGACGTTGTTGGTCGGGTGGAATCCCTTCCTTATCCTGAATTTTCGCCTTG 494366 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| || | ||| || || | || || || || || || | |||| Sbjct 494367 ACATTTTCGATGGTATCACTTGATTCGACTTCCAAAGTTATGGTTTTCCCTGTCAATGTT 494426 Query 104543 TTTACAAATATCTGCAT 104559 || || ||||||||||| Sbjct 494427 TTGACGAATATCTGCAT 494443 >seq1456 Length=366961 Score = 105 bits (116), Expect = 2e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195 ||||||| ||||| || || || ||||| ||||| || || || ||||| || |||| Sbjct 310987 TAGTTGCCTTTGCTGCAGTCGAGGGTATTTTCTTCTCTGGCAGCTTCGCCGCAATATTTT 310928 Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255 || |||| ||| | || | ||||| || ||||| ||| || ||| |||| || |||| Sbjct 310927 GGCTGAAAAAACGCGGTTTGATGCCTGGGTTAACATTCAGCAATGAACTGATCAGTAGGG 310868 Query 269256 ACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 | || ||| |||||||||||||||| || || Sbjct 310867 ATGAGGGTCTACACTGCGACTTCGCCTGCTT 310837 Score = 89.7 bits (98), Expect = 1e-12 Identities = 201/302 (67%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750 |||||| || ||||||| |||| || || || | ||| | ||| | | || || Sbjct 311471 AACCCACATCGATTTGTTCTATTCCCCATCCAATACCACGATGTTTGGCAGTTTTATAAG 311412 Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810 | || || || || |||||||| || || || || ||||| || | || || | || Sbjct 311411 AAAGCAGTCGCATCGTTTTGGACCGTTGAGGAGGTCGATCTCTCCAAGGATTTTAGTGAC 311352 Query 268811 TGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870 ||||| | | | || | ||| | || || || ||| | | || || ||||| Sbjct 311351 TGGAATAGTCTCAAGGTCGGCGAACGTCACTTCATCTCATATGTGTTAGCCTTCTTTGCT 311292 Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATT 268930 | |||||||| || || || ||| | || ||| ||| ||||||| || || || Sbjct 311291 GCAAGTGATGGAATAGTGCTAGAGAATTTGGTCGAGCGTTTCAGTCAAGAAGTTCAAGTT 311232 Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATG 268990 || || | | | |||||||| || | ||||| || || || || || |||||||||||| Sbjct 311231 CCGGAGGTCCGGTGTTTTTATGGGATGCAGATCGCCATCGAGAACATACATTCAGAGATG 311172 Query 268991 TA 268992 || Sbjct 311171 TA 311170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151334257034384