Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq3218 251 2e-62 seq1110 224 2e-54 >seq3218 Length=1940 Score = 251 bits (278), Expect = 2e-62 Identities = 139/139 (100%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 33536 CCCATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCG 33595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1940 CCCATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCG 1881 Query 33596 TGGCTGATGCCATGTAGCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTGGT 33655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1880 TGGCTGATGCCATGTAGCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTGGT 1821 Query 33656 TTTTCAGGACGGTTTTTCC 33674 ||||||||||||||||||| Sbjct 1820 TTTTCAGGACGGTTTTTCC 1802 >seq1110 Length=2318 Score = 224 bits (248), Expect = 2e-54 Identities = 223/288 (77%), Gaps = 23/288 (8%) Strand=Plus/Plus Query 37226 GTCAGAGAGATTGATGTATGAGCAGAGTCACCGCAATTATCTCCGCTCTGGTTATTTGCA 37285 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1592 GTCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCA 1651 Query 37286 TCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAG 37345 ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 1652 TCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 1711 Query 37346 AGCAGCGCGATAAA---GCCACA----TCCATC--------------ATCGCTGATATGC 37384 |||||||| ||| |||| | | | | || |||| |||| Sbjct 1712 CCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGC 1771 Query 37385 AGAAGCGGCAACATGATGTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATG 37444 ||| ||| || | |||||| || | || || || | |||||| |||||| | ||||||| Sbjct 1772 AGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATG 1831 Query 37445 CTAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 37491 | || || || || || ||| |||| ||||||| | ||||||||| Sbjct 1832 CGAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124809555437880