Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1332 100 2e-16 seq1867 84.2 2e-11 >seq1332 Length=523337 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 48498 AACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAG 48557 |||| || ||||| | | ||| |||||||| ||| |||||||||||||||||||||| Sbjct 493987 AACCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAG 494046 Query 48558 CCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 | | || || |||| |||| |||||| || | |||| |||||||||||||| Sbjct 494047 AGAGAGTG-CGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGA 494105 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG-ACGCTATGGTATCGGTAGACTC 48675 || | | ||||| || ||| || |||| | | | | || ||||| ||| ||| Sbjct 494106 GGAATGCCCTCCTTATCTTGAATCTT-AGCTTTAACGTTCTCGATCGTATCACTAGCCTC 494164 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || ||||| || ||||| |||||||| ||||| Sbjct 494165 GACCTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || |||||||| | | || | ||||| || |||||||| |||||||| |||| Sbjct 494445 CCACCGCGCAAGCGGAGAACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAA 494504 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || | || || ||||| || || || |||| || ||||||||||| || Sbjct 494505 AGAGTG-CGTCCATCTTCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGG 494563 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| || ||| || ||| | | | | |||||||| | | ||| Sbjct 494564 AATGCCTTCCTTATCTTGAATCTTAGCCTTCACATTCTCGATGGTATCACTCGCCTCAAC 494623 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCG 48728 ||||| |||||||| || || || | || ||||| ||||||||||||| Sbjct 494624 CTCGAGAGTTATGGTCTTTCCTGTCAACGTCTTCACGAAAATCTGCATCG 494673 >seq1867 Length=410790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48498 AACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAG 48557 |||| ||||| | | | ||| | ||| || ||| || ||||| ||||||||||| | Sbjct 315007 AACCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGG 315066 Query 48558 CCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| |||| || || || || ||| | |||| ||||||||||| || | Sbjct 315067 ACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTG 315126 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||| ||||| ||| ||| ||| | | | | ||||||||| | | || Sbjct 315127 GGATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAA 315186 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || || |||||||| || || |||||||| |||||||| Sbjct 315187 CTTCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421228877372348