Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq1110 280 4e-71 seq1097 239 1e-58 >seq1110 Length=2318 Score = 280 bits (310), Expect = 4e-71 Identities = 211/248 (85%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 21936 ATGAGCAGATTAACCTCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 21995 ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1609 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 1668 Query 21996 TGGGCTGTTAATCATTATCGTGATAACGCCATCACCTACAAAGTCCAGCGCGACACTGTT 22055 ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| | Sbjct 1669 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 1728 Query 22056 ACTCAAAAGCTGGCGCTGGCGAACGCGACAATTACCGATATGCAAACGCGCCAGCGTGAT 22115 | | | ||| ||||||||||||| ||||||| || ||||| | ||| ||||||||| Sbjct 1729 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGAT 1788 Query 22116 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCGAAAGCTGAGAATGAT 22175 || || | || || || | |||||| |||||| | ||||||||||||||||| |||||| Sbjct 1789 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGAT 1848 Query 22176 GCTCTTCG 22183 ||||| || Sbjct 1849 GCTCTGCG 1856 >seq1097 Length=3195 Score = 239 bits (264), Expect = 1e-58 Identities = 244/315 (77%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 4050 TTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTCAAAAGTCATGTCAGGCGTC 4109 |||| || || ||||| | ||| || | |||||||| |||||||| | ||||| Sbjct 3 TTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAA 62 Query 4110 TCTCCTAATTTATTTACCCTCCATGCTTCTGCCTTCAGTTTGTCATGAAGCTCTGTGGCC 4169 || |||| || | ||| | ||| |||||| || | ||||| || | ||| || Sbjct 63 TCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCT 122 Query 4170 TGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTTTGCCGTTCGGCAATGTGAA- 4228 |||| |||||||||||| |||||||| | ||||| || ||| ||| ||| | | ||| Sbjct 123 TGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGA--GCGAAT 180 Query 4229 AC-TGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTTCAGTTCCTCTGTTATGTC 4287 || ||| ||||| ||||| ||||||||| |||||||||| ||||||||||||| | Sbjct 181 ACGAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCC 240 Query 4288 ATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGATTGAAGTGCCGCAACGCAGGCTTG 4347 |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| Sbjct 241 ATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTG 300 Query 4348 TCGTGTGGTGAGGTA 4362 ||||| |||||||| Sbjct 301 CCGTGTTGTGAGGTA 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132322767491928