Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1522 89.7 3e-13 seq2385 87.8 9e-13 seq2350 87.8 9e-13 seq1802 87.8 9e-13 seq1393 87.8 9e-13 seq1299 86.0 3e-12 seq416 84.2 1e-11 >seq1522 Length=293204 Score = 89.7 bits (98), Expect = 3e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 186372 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 186313 Query 11528 CCG 11530 ||| Sbjct 186312 CCG 186310 >seq2385 Length=988839 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 55727 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 55786 Query 11528 CC 11529 || Sbjct 55787 CC 55788 >seq2350 Length=1494832 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 81124 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 81183 Query 11528 CC 11529 || Sbjct 81184 CC 81185 >seq1802 Length=801687 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 18972 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 18913 Query 11528 CC 11529 || Sbjct 18912 CC 18911 >seq1393 Length=435951 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 91919 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 91978 Query 11528 CC 11529 || Sbjct 91979 CC 91980 >seq1299 Length=556264 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/72 (88%), Gaps = 4/72 (6%) Strand=Plus/Minus Query 11453 AATTGGCCC--ATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 ||||||||| ||| |||||||||| |||| |||||||||||||||||||||||| | Sbjct 174648 AATTGGCCCGGATGG--GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAA 174591 Query 11511 CCAACTGAGCTA 11522 |||||||||||| Sbjct 174590 CCAACTGAGCTA 174579 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/72 (88%), Gaps = 4/72 (6%) Strand=Plus/Plus Query 11453 AATTGGCCC--ATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 ||||||||| ||| |||||||||| |||| |||||||||||||||||||||||| | Sbjct 199603 AATTGGCCCGGATGG--GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAA 199660 Query 11511 CCAACTGAGCTA 11522 |||||||||||| Sbjct 199661 CCAACTGAGCTA 199672 >seq416 Length=158946 Score = 84.2 bits (92), Expect = 1e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATG 11525 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| || Sbjct 57449 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACTG 57392 Lambda K H 0.640 0.410 0.922 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261477343254448