Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1873 98.7 9e-16 seq1332 98.7 9e-16 seq1867 95.1 1e-14 >seq1873 Length=396352 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || || | ||||| |||| ||||| || ||||| || || | ||| ||||| Sbjct 292715 CCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAA 292656 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||| || ||||| | || || |||| ||| ||||||||||| Sbjct 292655 AGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGGG 292596 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | ||| || || ||||| ||| || || | || || Sbjct 292595 ATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCAACC 292536 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||| || || ||||| || || || || || ||||||||||| Sbjct 292535 TCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 292489 >seq1332 Length=523337 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||| || | |||||| || | ||| ||||||||||| | ||| ||||| Sbjct 493989 CCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 494048 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| || |||| ||| || || |||| || || | ||||||||||||||| Sbjct 494049 AGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGA 494108 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | ||| || || || ||| ||| || ||| ||||| Sbjct 494109 ATGCCCTCCTTATCTTGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGACC 494168 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||| || ||||| || || ||||| ||||| || ||||||| Sbjct 494169 TCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCATGC 494217 >seq1867 Length=410790 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||||||||||||||| || || || | ||| ||||| || ||| Sbjct 291214 CGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCG 291273 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || ||||| || | || || | | |||||| || || || || ||||| || Sbjct 291274 TCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 291333 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || || || ||| | | |||||| | ||||| || | ||||| Sbjct 291334 TCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATA 291393 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || |||||||| |||||||| Sbjct 291394 GTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||||| || | ||| ||||| ||||| | ||| |||||| || ||| | || || Sbjct 315026 CACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGT--TCGACCGTCT 315083 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || ||||| ||| |||| || || | ||||| || || || || ||||||||||| Sbjct 315084 TCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCT 315143 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGT 94974 | ||| || ||||| || | | || || || || || || |||| ||||| || Sbjct 315144 TGAATCTTCGCCTTCACATTCTCAATGGTATC-GCTTGCTTCAACTTCAAGGGTGATCGT 315202 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || |||||||| |||||||||| Sbjct 315203 CTTACCGGTCAGGGTCTTCACAAATATCTGCATGC 315237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448266835373280