Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq553 178 2e-40 seq2408 159 5e-35 seq2384 127 3e-25 seq596 87.8 3e-13 >seq553 Length=89380 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| ||| || ||||||||||| |||||||| ||||| || ||| Sbjct 65450 GCGAAACGCCATCGCAAGGTTCTCCGGGATAACATCCAGGGAATCACGAAGCCGGCCATC 65391 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| || ||||| || ||||| |||| || || |||| || || | Sbjct 65390 CGCCGTCTGGCTCGCCGAGGTGGTGTGAAGCGCATCTCCGGTCTGATCTACGAGGAAACC 65331 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| ||| ||| |||| ||| || || ||| |||||| Sbjct 65330 CGTGGTGTCCTGAAGGTGTTCCTTGAGAACGTCATCCGTGACGCCGTCACCTACACCGAG 65271 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| ||||||| | || || || |||||||||||||| Sbjct 65270 CACGCCAAGCGAAAGACCGTCACTGCCATGGACGTTGTGTACGCCTTGAAACGTCAAGGT 65211 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || || || || |||||| Sbjct 65210 CGCACTCTGTACGGCTTCGGTGGTTAAT 65183 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| ||| || ||||||||||| || ||||| ||||| || ||| Sbjct 55767 GCGAAACGCCATCGCAAGGTTCTCCGGGATAACATCCAGGGGATCACGAAGCCGGCCATC 55708 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| || ||||| || ||||| |||| || || |||| || || | Sbjct 55707 CGCCGTCTGGCTCGCCGAGGTGGTGTGAAGCGCATCTCCGGTCTGATCTACGAGGAAACC 55648 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| ||| ||| |||| ||| || || ||| |||||| Sbjct 55647 CGTGGTGTCCTGAAGGTGTTCCTTGAGAACGTCATCCGTGACGCCGTCACCTACACCGAG 55588 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| ||||||| | || || || ||||||||||||||| Sbjct 55587 CACGCCAAGAGGAAGACCGTCACTGCCATGGACGTTGTGTACGCCTTGAAACGTCAAGGC 55528 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || || || || |||||| Sbjct 55527 CGCACTCTGTACGGCTTCGGTGGTTAAT 55500 >seq2408 Length=952527 Score = 159 bits (176), Expect = 5e-35 Identities = 183/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||| ||||| || ||||| || |||||||| || ||||| | |||||| Sbjct 55374 CTGCGTGACAACATACAAGGTATAACCAAACCTGCTATCCGACGATTGGCTAGACGTGGT 55433 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||| ||| ||||||| || | |||||||||| || | || || || | || Sbjct 55434 GGAGTCAAACGTATCTCTGGTCTGATTTATGAAGAGACGCGGGGCGTCTTAAAAGTGTTT 55493 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | |||||| | |||||| || ||||| ||||| ||||||||| Sbjct 55494 TTGGAGAATGTCATACGTGATGCCGTAACCTATACGGAACACGCGAAACGCAAGACTGTC 55553 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | |||||||| | ||||| || || |||| ||||||||||||| Sbjct 55554 ACTGCTATGGATGTTGTCTATGCTCTCAAACGCCAGGGTCGTACTCTTTATGGTTTTGGT 55613 Query 16694 AGTTAA 16699 ||||| Sbjct 55614 GGTTAA 55619 >seq2384 Length=1099997 Score = 127 bits (140), Expect = 3e-25 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| ||| || ||||||||||| || |||||||||||||| || Sbjct 792393 CGCGAAACGCCATCGCAAGGTTCTCCGGGATAACATCCAGGGGATCACCAAGCCAGCCAT 792452 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||||||||| ||||| | ||||| |||| || || |||| || || | Sbjct 792453 CCGCCGTCTGGCTCGTCGAGGTGGCGCGAAGCGCATCTCCGGTCTGATCTACGAGGAAAC 792512 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||||| ||| ||| || | ||| || || ||| ||||| Sbjct 792513 CCGTGGTGTCCTGAAGGTGTTCCTTGAGAACGTCATTCGTGACGCCGTCACCTACACCGA 792572 Query 16612 GCA 16614 ||| Sbjct 792573 GCA 792575 >seq596 Length=76714 Score = 87.8 bits (96), Expect = 3e-13 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || |||||||||| | || || || ||||| ||||| || ||||||||||| || | Sbjct 26565 CGCAAAACGTCATCGCAAGGTC-CTCCGGGATAAAATCCAGGGGATCACCAAGCCGGCCA 26507 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | ||||||||| || ||||| || || || |||| || || |||| || || | Sbjct 26506 TCCGCCCTCTGGCTCGCCGAGGTGGTGTGAAACGCATCTCCGGTCTGATCTACGAGGAAA 26447 Query 16551 TTCGTGATGTTT 16562 |||| || || Sbjct 26446 CCCGTGGTGGTT 26435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071224593164