Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq1110 342 2e-89 seq1097 230 7e-56 >seq1110 Length=2318 Score = 342 bits (378), Expect = 2e-89 Identities = 341/444 (77%), Gaps = 9/444 (2%) Strand=Plus/Plus Query 45141 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATCG 45200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1643 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 1702 Query 45201 CCTACAAAGAGCAGCGCGATACCGTTACTCATA-AGCTGACGCTGGCGAACGCGACAATT 45259 ||||||||| |||||||| | | | || | | |||| ||||||||||||| ||||| Sbjct 1703 CCTACAAAGCCCAGCGCGACAAAAATGC-CAGAGAACTGAAGCTGGCGAACGCGGCAATT 1761 Query 45260 ACCGACATGACGAAGCGTCAGCGTGATGTTGCCGACCTCGATGCAAGATATATAAAGGAA 45319 || || ||| || |||||||||||||||||| | |||||||||| ||| | ||||| Sbjct 1762 ACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAG 1821 Query 45320 TTAGCCGATGCGAAAGCTGAGAATGATGCTTTGCGCGATGATGTCNNNNNNNNNNNNNNN 45379 ||||| |||||||||||||| ||||||||| |||| |||||||| Sbjct 1822 TTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGT 1881 Query 45380 NNCCTGCTCGTCAACGCCACCTGTCCCGCAATGCCAACAGGTAAATCCACCTCCGCCGCC 45439 ||| | |||| || ||||| || ||| || || ||||| ||||| || Sbjct 1882 CGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGC------GTGAAGCCACCACCGCCTCC 1935 Query 45440 AGCGTGGATAATGCATCCCGCCCCAGACTGGCAGACTCCGCTCAACGGGATTATTTCACC 45499 |||||||||||||| || |||| ||||||||||| ||||| ||||||||||||||||| Sbjct 1936 GGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACC 1995 Query 45500 CTCAAAGAGCGAGTGACAACAATGCAAAAGCAACTGGAAGGGGCGCAGGACTATATCAGA 45559 |||| |||| | ||| || |||||||| ||||||||||| | ||| | ||||| | Sbjct 1996 CTCAGAGAGAGGCTGATCACTATGCAAAAACAACTGGAAGGAACCCAGAAGTATATTAAT 2055 Query 45560 ACGCAGTGCCAGAAATAATTTCCC 45583 |||||| |||| | | || ||| Sbjct 2056 GAGCAGTG-CAGATAGAGTTGCCC 2078 >seq1097 Length=3195 Score = 230 bits (254), Expect = 7e-56 Identities = 242/315 (77%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 27348 TTATGCGCCTTCTCCTCTAACCACCTGACACAGGCTTCCTCAAAAGTCATGTCAGGCGTC 27407 |||| || || ||||| | ||| || | ||||| || |||||||| | ||||| Sbjct 3 TTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAA 62 Query 27408 TCGCCTAATTTACTTACCCTCCATGCTTCGGCCTTCAGCCTGTCATGAAGCTCCGTGGCC 27467 || |||| || ||| | ||| ||| || || || |||| || | |||| || Sbjct 63 TCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCT 122 Query 27468 TGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTTTGCCGTCCGGCAATGTGAA- 27526 |||| |||||||||||| |||||||| | ||||| || ||| ||| |||| | | ||| Sbjct 123 TGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGA--GCGAAT 180 Query 27527 AC-TGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTTCAGTTCCTCTGTTATGCC 27585 || ||| ||||| ||||| ||||||||| |||||||||| ||||||||||||||| Sbjct 181 ACGAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCC 240 Query 27586 ATCACCCGCGCTCACGGCGACAGTATGCATCGGAGACTGAAGAGCCGCAATGCAGGCTTG 27645 ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| Sbjct 241 ATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTG 300 Query 27646 TCGTGTAGTGAGGTA 27660 ||||| |||||||| Sbjct 301 CCGTGTTGTGAGGTA 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149950657272912