Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1456 163 4e-35 seq2115 87.8 2e-12 >seq1456 Length=366961 Score = 163 bits (180), Expect = 4e-35 Identities = 541/836 (65%), Gaps = 49/836 (6%) Strand=Plus/Plus Query 33109 TTTTTAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATC 33168 |||| | |||||||||| | || | ||||||| |||||| || || |||| Sbjct 310645 TTTTCATGTCCCAATTCAACCAACAGCCGGTCCGCGATGAATTCGATGTAGCGACACATC 310704 Query 33169 ATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCA 33228 | | || ||||| || || | | ||||| | ||| | | |||||| | |||||| Sbjct 310705 AACTTGCAGTTCATACCAATCAAACTCACTGGCAAAGCATCCGAAAGAAACTTTTGTTCT 310764 Query 33229 ATGGATACCGCATCTGTTATAATAG--ATCTAACGGTTTCTT-CACTCGGTGGATGCAAT 33285 || |||||| || | || || | | | ||| | || || | | || |||| Sbjct 310765 ATTTCTACCGCCTCCTTAATGATGGCAAGCACACGATCCTTTGCAGGCTTTTGAA-CAAT 310823 Query 33286 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGT 33345 || | || || ||| || ||||| |||||||| |||||||| || ||||| || ||| Sbjct 310824 GTATTTGTA--CAGCAAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGT 310881 Query 33346 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33405 || ||| || || | || ||||| | || || ||||| ||||||||||| | ||| Sbjct 310882 TCATTGCTGAATGTTAACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCG 310941 Query 33406 AATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA--- 33462 || ||||| ||||| || || || |||||||||||||||| | | ||| || Sbjct 310942 AAGCTGCCAGAGAAGAAAATACCCTCGACTGCAGCAAAGGCAACTATACGCTCCGCAAAC 311001 Query 33463 -TAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521 || | | | ||| ||||| || | ||||| | ||||||| |||| | Sbjct 311002 GTAGAATGAG-TATCACCAATCCAGTTGAGCGCCCATTGCGCCTTCTGCGCGACAC-ACT 311059 Query 33522 CATCGTTTCT-ATGGCATTAAA---GAGAT-------AGttt-------tt--------- 33554 | ||| || ||||| || || || || || | || Sbjct 311060 CTAGGTTGCTGATGGCGTTGAACAGGAAATCCCTGCGAGAATACACAAATTAAAATAAGA 311119 Query 33555 ttCATTAC----------TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604 ||| |||| |||||| | ||| || || |||| ||| |||||| || | Sbjct 311120 TTCCTTACCGTTCTGTTGGATCTTTGATATATGTGTCAATCAGAAGTGAATACATCTCTG 311179 Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664 |||| ||||| || ||||| ||||| | || || ||||| | |||| | || || | Sbjct 311180 AATGTATGTTCTCGATGGCGATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAA 311239 Query 33665 CTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33724 ||||| || || || || ||||||| || ||||||||| ||||| || ||||| | Sbjct 311240 CTTCTTGACTGAAACGCTCGACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGA 311299 Query 33725 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33784 | || || |||| | || || | |||| | | || ||||||| ||| | | Sbjct 311300 AGGCTAACACATATGAGATGAAGTGACGTTCGCCGACCTTGAGACTATTCCAGTCACTAA 311359 Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844 ||| || || | ||| || || || || |||||||| ||||| |||| || ||||| | Sbjct 311360 AATCCTTGGAGAGATCGACCTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAA 311419 Query 33845 TGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 33900 | ||| | || | |||||||| ||||| | |||||||| || ||| || ||| Sbjct 311420 ACTGCCAAACATCGTGGTATTGGATGGGGAATAGAACAAATCGATGTGGGTTCGGT 311475 >seq2115 Length=135315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 177/260 (68%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 63165 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63224 || || |||||||| | ||| ||| | || ||| || | | ||| ||||||| | Sbjct 40255 AAACCTGGACATTCGTGTGGATCCATGAGCGTCCAATCCTCATTGGCCTCCACTCGTCGC 40314 Query 63225 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 63283 || |||| ||| || ||||| || || ||| || | |||| | | ||| ||| Sbjct 40315 ATGAAGATATCCGGTATCCAGAGGGC-ATAGAACAAGTCTCGACCACGAATTTCTTCGGC 40373 Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 || ||||| ||| | || | |||| | | || | |||||||||||||| ||| Sbjct 40374 ACCAGTATTTTTTCGCATTTCAATGAACTGAAGGACGTCCGGATGCCACGGTTCCAGGTA 40433 Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403 | ||| | | | || || ||||| ||||| || || || ||||| | ||| |||||||| Sbjct 40434 GACGGCGAAAGCACCGGGGCGTTTATTTCCGCCTTGGTCGATGTAGCGAGCAGTGTTATT 40493 Query 63404 ATAAACTCTCAACATTGGAA 63423 | | || | |||||| |||| Sbjct 40494 AAACACACGCAACATGGGAA 40513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622913342819680