Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1867 114 1e-20 >seq1867 Length=410790 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || ||| | ||||| || | |||||| | ||| | ||| ||| Sbjct 315464 AATGCAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAAG 315405 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| ||||| ||| | || || |||||| ||||| ||||| || || || || || Sbjct 315404 CGATACCATTGAGAATGTAAAGGCGAAGATTCAAGACAAGGAAGGCATCCCACCTGACCA 315345 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | | |||| | |||||||||||| ||||| | | ||| | ||| || || Sbjct 315344 GCAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAA 315285 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| ||||||||||| ||| |||||||||| || Sbjct 315284 CATCCAAAAAGAATCCACTCTCCATCTGGTGCT 315252 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || || || |||||||| | ||| | ||| ||| | Sbjct 315235 ATGCAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAGC 315176 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | || || |||||| ||||||||||| || || || || || Sbjct 315175 GATACCATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGCATCCCACCTGACCAG 315116 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| | |||||||||||| ||||| | | ||| | ||| || ||| Sbjct 315115 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAAC 315056 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||||||||| ||| |||||||||| || Sbjct 315055 ATCCAAAAAGAATCCACTCTCCATCTGGTGCT 315024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478636384698560