Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2115 107 5e-18 seq1456 87.8 5e-12 >seq2115 Length=135315 Score = 107 bits (118), Expect = 5e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 364132 ATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAAC 364191 ||||| || | ||||| || || ||||| |||| ||| ||||||| ||| | |||||| Sbjct 37965 ATCATTGAGGCTCAGATCGAAACCGGAACTCCCTTCATGCTGTACAAGGATGCTTGCAAC 37906 Query 364192 CGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATT 364251 | |||||||| || ||||| || || || || | | || ||||| ||||| |||||| Sbjct 37905 AGGAAGTCCAATCATCAGCATCTGGGAACCATCCGGTGTAGTAACCTGTGTACAGAGATT 37846 Query 364252 ATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308 ||||| || | | | || || || ||||| || || || || || || ||| | ||| Sbjct 37845 ATTGAGTATAGCTCACCGGATGAAACTGCAGTTTGCAATCTCGCTTCTATCTCCCTT 37789 Score = 87.8 bits (96), Expect = 5e-12 Identities = 188/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 ||||||||| | ||||||||| | || ||||| | ||| ||||||| || ||| || Sbjct 40514 GTTCCCATGTTGCGTGTGTTTAATAACACTGCTCGCTACATCGACCAAGGCGGAAATAAA 40455 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 ||| || || || || | || || || || ||| | || | || |||| || Sbjct 40454 CGCCCCGGTGCTTTCGCCGTCTACCTGGAACCGTGGCATCCGGACGTCCTTCAGTTCATT 40395 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 || | || ||||| || || || ||| | |||| || || |||||||||| || Sbjct 40394 GAAATGCGAAAAAATACTGGTGCCGAAGAAATTCGTGGTCGAGACTTGTTCTATGCCCTC 40335 Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGC 364011 ||| | | || || ||| || |||||||| | || ||||| | ||| | Sbjct 40334 TGGATACCGGATATCTTCATGCGACGAGTGGAGGCCAATGAGGATTGGACGCTCATGGAT 40275 Query 364012 CCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGA 364052 |||||||||||||||||| | | ||| |||||||| || Sbjct 40274 CCACACGAATGTCCAGGTTTACCTGATAAGTGGGGTGAGGA 40234 >seq1456 Length=366961 Score = 87.8 bits (96), Expect = 5e-12 Identities = 196/291 (67%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATT 22541 || ||||| ||| | |||| ||||||| || || || |||||||| ||||| ||| || Sbjct 311000 TTTGCGGAGCGTATAGTTGCCTTTGCTGCAGTCGAGGGTATTTTCTTCTCTGGCAGC-TT 310942 Query 22542 TTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGA 22601 ||||| |||||||| |||||||| | | ||||| || |||| || ||||| Sbjct 310941 CGCCGCAATATTTTGGCTGAAAAAACGCGGTTTGATGCCTGGGTTAACATTCAGCAATGA 310882 Query 22602 GTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCA 22661 | || || | ||||||||||| || ||| || || || |||| || || | Sbjct 310881 ACTGATCAGTAGGGATGAGGGTCTACACTGCGACTTCGCCTGCTTGCTGTA---CAAATA 310825 Query 22662 TATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACT 22721 || |||| || | | || | || ||| |||| || |||| | || || ||| | Sbjct 310824 CATTGTTCAAAAGCCTGCAAAGGATCGTGTGCTTGCCATCATTAAGGAGGCGGTAGAAAT 310765 Query 22722 TGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAA 22772 |||| ||| ||| || || || ||||| ||| | |||||||| || Sbjct 310764 AGAACAAAAGTTTCTTTCGGATGCTTTGCCAGTGAGTTTGATTGGTATGAA 310714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303280991800136