Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1332 122 8e-23 seq1867 118 1e-21 >seq1332 Length=523337 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||||||| ||||| ||||| | || || |||||||||||||||||||| Sbjct 493989 CCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 494048 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || | |||||||||||| | || ||||||||||| || ||||| Sbjct 494049 AGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGA 494108 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| | | |||| | | | ||| | ||||| | | ||||| Sbjct 494109 ATGCCCTCCTTATC-TTGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGAC 494167 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || |||||||| ||||| || ||||| |||||| Sbjct 494168 CTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCATG 494216 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| || || || | || | ||||| |||||||| |||||||| || Sbjct 494445 CCACCGCGCAAGCGGAGAACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAA 494504 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || |||||||| ||||| ||| | || || |||||||| || || || Sbjct 494505 AGAGTGCGTCCATCTTCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGA 494564 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || || ||| | | ||| | ||||| | | ||| | Sbjct 494565 ATGCCTTCCTTATCTTGAATCTTAGCCTTCACATTCTCGATGGTATCACTCGCCTCAACC 494624 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || | || || |||||||||||||| Sbjct 494625 TCGAGAGTTATGGTCTTTCCTGTCAACGTCTTCACGAAAATCTGCAT 494671 >seq1867 Length=410790 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| | ||| | || || || ||||| |||||||||||| | Sbjct 315009 CCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315068 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || || || ||||| || | || |||||||||||||| || ||| Sbjct 315069 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315128 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| || ||| ||| | | ||| | |||||| | | || | Sbjct 315129 ATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACT 315188 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || |||||||| || || || || || ||||||||| Sbjct 315189 TCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCATG 315236 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| | ||| | || || || ||||| |||||||||||| Sbjct 315236 GCCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGA 315295 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||| || || || ||||| || | || |||||||||||||| || || Sbjct 315296 CAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGG 315355 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| || ||| ||| | | ||| | |||||| | | || | Sbjct 315356 GATGCCTTCCTTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAAC 315415 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATT 131242 || | ||| | ||| || || || || || || ||||| || ||||| || ||| Sbjct 315416 TTCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATTGCTAATT 315471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || ||||||| || | ||| || || || || |||||||| || | Sbjct 291886 CCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 291945 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||||||| || ||||| ||| | || | || |||||||| || ||| Sbjct 291946 AATGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 292005 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || ||| || | | ||| | || || ||| ||||| Sbjct 292006 ATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACC 292065 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || || ||||||||||| Sbjct 292066 TCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| || || || | || ||||| || || ||||||||||| | Sbjct 291202 CCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGAC 291261 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||||||| || ||||| ||| | || | || |||||||| || ||| Sbjct 291262 AAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 291321 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || ||| || | | ||| | || || ||| ||||| Sbjct 291322 ATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACC 291381 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || || ||||||||||| Sbjct 291382 TCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471987146104320