Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1867 91.5 1e-13 >seq1867 Length=410790 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16703 ATTTACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAG 16762 ||||| || || || || | || |||| |||| || ||||| || || |||||||| Sbjct 291196 ATTTAACCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAA 291255 Query 16763 TCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCC 16822 || | || || ||||||| | ||||||||| || ||||||| || || ||||| Sbjct 291256 TCAGACAAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCA 291315 Query 16823 ACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC 16882 || | ||| || || || ||| | | ||||| | | | ||||| | || | Sbjct 291316 GGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCC 291375 Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | |||||| || || || |||||||| || |||||||||||||| Sbjct 291376 TCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || || || || || ||||||||||| | || || |||| ||||||||| Sbjct 291454 TGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGT 291513 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || ||||||| || || ||||| || | ||| || || || ||| | | Sbjct 291514 TTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTC 291573 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||||| | | | ||||| | || ||| || | |||||| || || || ||| Sbjct 291574 GCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTC 291633 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| || |||||||||||||| Sbjct 291634 AGCGTCTTCACAAAAATCTGCAT 291656 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || || || || || ||||||||||| | || || |||| ||||||||| Sbjct 291682 TGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGT 291741 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || ||||||| || || ||||| || | ||| || || || ||| | | Sbjct 291742 TTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTC 291801 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||||| | | | ||||| | || ||| || | |||||| || || || ||| Sbjct 291802 GCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTC 291861 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| || |||||||||||||| Sbjct 291862 AGCGTCTTCACAAAAATCTGCAT 291884 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || || || || || ||||||||||| | || || ||||||| | |||| Sbjct 291910 TGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCCTCTAGTTGT 291969 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || ||||||| || || ||||| || | ||| || || || ||| | | Sbjct 291970 TTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTC 292029 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||||| | | | ||||| | || ||| || | |||||| || || || ||| Sbjct 292030 GCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTC 292089 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| || |||||||||||||| Sbjct 292090 AGCGTCTTCACAAAAATCTGCAT 292112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405066533880520