Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1867 136 3e-27 seq1427 136 3e-27 seq1332 116 2e-21 seq1514 109 4e-19 seq1873 100 2e-16 >seq1867 Length=410790 Score = 136 bits (150), Expect = 3e-27 Identities = 180/247 (73%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 38073 ATACAAATCCAATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTT 38131 |||| ||| ||| |||| ||||| | | ||| | ||||| ||| |||||| || || Sbjct 314991 ATACGAATA-AATGATTAACCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTT 315049 Query 38132 TTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAG 38191 ||| || |||||||| |||| | || |||| || | |||||| |||||||| || | Sbjct 315050 TTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAA 315109 Query 38192 GCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGAC 38251 || || || || | |||| |||||||||||| ||| || ||||||||||| | Sbjct 315110 ACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAAT 315169 Query 38252 AGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATAT 38311 ||||| | ||||||||| | || || || ||||| |||| ||| ||||| ||||| Sbjct 315170 GGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATAT 315229 Query 38312 CTGCATG 38318 ||||||| Sbjct 315230 CTGCATG 315236 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||||| ||| |||||| || ||||| || |||||||| ||| Sbjct 315237 CCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315296 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || | |||||| |||||||| || | || || || || | ||| Sbjct 315297 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315356 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| ||| || ||| ||||||| | ||||| | ||||||| Sbjct 315357 ATGCCTTCCTTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACT 315416 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || || | || ||||||||||| ||||| Sbjct 315417 TCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCAT 315463 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||||| ||||| || | ||| ||| || || || ||||||||||| Sbjct 291201 ACCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGA 291260 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| ||| |||| |||| |||||| || || || || |||||||| || || | || Sbjct 291261 CAAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGG 291320 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || |||||| || || ||| || ||||| |||| | || || | || || Sbjct 291321 GATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 291380 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || ||||| || || |||| || ||||| || |||||||| Sbjct 291381 CTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 >seq1427 Length=392162 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 80832 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 80891 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 80892 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 80926 Score = 86.0 bits (94), Expect = 4e-12 Identities = 59/67 (88%), Gaps = 5/67 (7%) Strand=Plus/Plus Query 25930 TAGATAGTAGATAGGGG-----GTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAG 25984 |||||||||||||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 81181 TAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 81240 Query 25985 ATGACGA 25991 ||||||| Sbjct 81241 ATGACGA 81247 >seq1332 Length=523337 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||| ||||| || ||||| || || | | ||| |||| || ||||| || || ||||| Sbjct 494252 CTCTTTTTGGATGTTGTAGTCTGAGAGAGTGCGTCCGTCTTCCAATTGCTTCCCTGCAAA 494311 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || |||||||| |||| || | ||||| || ||| |||||| ||| ||||| Sbjct 494312 AATCAGACGTTGTTGGTCGGGTGGAATCCCTTCCTTATCCTGAATTTTCGCCTTGACATT 494371 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || ||||| | ||| ||||| || || || ||||| || ||||| ||||| || Sbjct 494372 TTCGATGGTATCACTTGATTCGACTTCCAAAGTTATGGTTTTCCCTGTCAATGTTTTGAC 494431 Query 38306 GAATATCTGCAT 38317 |||||||||||| Sbjct 494432 GAATATCTGCAT 494443 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || | |||||| | |||||||||||||||| ||||||||||| ||||||||||| Sbjct 493988 ACCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 494047 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | || |||| || || || || || ||||| || | || || ||||| | || Sbjct 494048 GAGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGG 494107 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||| || || || ||| || || || |||| || ||||| | | || || Sbjct 494108 AATGCCCTCCTTATCTTGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGAC 494167 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || ||||| || || || | ||||| || || || |||||| Sbjct 494168 CTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCATG 494216 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||| || | || | |||||||| |||||||| || ||||| ||||| Sbjct 494445 CCACCGCGCAAGCGGAGAACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAA 494504 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || |||| ||||| || || || || | ||| || ||||| | || Sbjct 494505 AGAGTGCGTCCATCTTCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGA 494564 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || || ||| || ||||||||||| || ||||| | ||||| Sbjct 494565 ATGCCTTCCTTATCTTGAATCTTAGCCTTCACATTCTCGATGGTATCACTCGCCTCAACC 494624 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || ||||| || |||||||| |||||||| Sbjct 494625 TCGAGAGTTATGGTCTTTCCTGTCAACGTCTTCACGAAAATCTGCAT 494671 >seq1514 Length=305774 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||| | ||||||||||||||| |||||||||||||||||| | || ||||| Sbjct 205140 AAGCCCGCTTCCTTGGCTGTGGTTTTGCTAGATAGTAGATAGGGACAGTAGGAAGCTCGT 205199 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| ||||||||||||||||| ||| Sbjct 205200 TAATCCATTCATGGGCGTCACTAATTAGATGGCGA 205234 >seq1873 Length=396352 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | |||| |||| ||| | ||| || || ||||| ||||||||||| Sbjct 292715 CCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAA 292656 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| |||| || | ||| ||||| || || || | ||||||||||| | ||| Sbjct 292655 AGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGGG 292596 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| ||| || || ||||| | || ||||| |||||| Sbjct 292595 ATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCAACC 292536 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | |||||||| || ||||| | || || ||||| |||||||| || Sbjct 292535 TCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 292486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334929450729188