Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1456 109 7e-19 seq2115 87.8 2e-12 >seq1456 Length=366961 Score = 109 bits (120), Expect = 7e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || ||||| ||||||||||||||||| || ||||| || | ||| ||| | Sbjct 310832 ACAGCAAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGA 310891 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | || | || ||||| | || || ||||| ||||||||||| | || || |||| Sbjct 310892 ATGTTAACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAG 310951 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805 | |||||||| || || ||||| |||||||||| Sbjct 310952 AGAAGAAAATACCCTCGACTGCAGCAAAGGCAA 310984 >seq2115 Length=135315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/257 (68%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63082 || |||||||| | ||| ||| | || ||| || | | ||| ||||||| ||| Sbjct 40258 CCTGGACATTCGTGTGGATCCATGAGCGTCCAATCCTCATTGGCCTCCACTCGTCGCATG 40317 Query 63083 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63141 |||| ||| || ||||| || || ||| || | |||| | | ||| ||| || Sbjct 40318 AAGATATCCGGTATCCAGAGGGC-ATAGAACAAGTCTCGACCACGAATTTCTTCGGCACC 40376 Query 63142 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63201 ||||| ||| | || | |||| | | || | |||||||||||||| ||| | Sbjct 40377 AGTATTTTTTCGCATTTCAATGAACTGAAGGACGTCCGGATGCCACGGTTCCAGGTAGAC 40436 Query 63202 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63261 ||| | | | || || ||||| ||||| || || || ||||| | ||| ||||||||| | Sbjct 40437 GGCGAAAGCACCGGGGCGTTTATTTCCGCCTTGGTCGATGTAGCGAGCAGTGTTATTAAA 40496 Query 63262 AACTCTCAACATTGGAA 63278 || | |||||| |||| Sbjct 40497 CACACGCAACATGGGAA 40513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633597562100800