Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1867 152 4e-32 seq1332 114 1e-20 >seq1867 Length=410790 Score = 152 bits (168), Expect = 4e-32 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| |||||||||| | ||||| | ||||| || | Sbjct 315235 ATGCAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAGC 315176 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| | || | ||| ||||||||||| || ||||||||||| Sbjct 315175 GATACCATTGAGAATGTGAAGGCGAAGATTCAA-GACAAAGAAGGCATCCCACCTGACCA 315117 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||||||||||||| | ||||| | ||| ||| || ||||||||| Sbjct 315116 GCAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAA 315057 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||||||||| || ||| | ||||| Sbjct 315056 CATCCAAAAAGAATCCACTCTCCATCTGGTGCT 315024 Score = 138 bits (152), Expect = 1e-27 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 ||||||||||||| || ||||| | || || || ||||||| | ||||| || | Sbjct 315465 CAATGCAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAA 315406 Query 25057 CTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | ||| | || | ||| ||||| ||||| || ||||||||| Sbjct 315405 GCGATACCATTGAGAATGTAAAGGCGAAGATTCAA-GACAAGGAAGGCATCCCACCTGAC 315347 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | |||||||||||||||||| | ||||| | ||| ||| || ||||||| Sbjct 315346 CAGCAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTAC 315287 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||||||||| || ||| | ||||| Sbjct 315286 AACATCCAAAAAGAATCCACTCTCCATCTGGTGCT 315252 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || | ||||| |||| || ||| | | Sbjct 291656 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291597 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| |||| || || | ||| || || ||||| || ||||||||||| Sbjct 291596 GACACAATTGAGAACGTGAAAGCGAAGATTCAA-GATAAGGAAGGCATCCCACCTGACCA 291538 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || ||||||| || ||||||||||| ||||| | ||| || || || ||||| Sbjct 291537 GCAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAA 291478 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||| || || || ||||||| Sbjct 291477 CATCCAGAAAGAATCTACCCTTCACCTAGTGCT 291445 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || | ||||| |||| || ||| | | Sbjct 291884 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291825 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| |||| || || | ||| || || ||||| || ||||||||||| Sbjct 291824 GACACAATTGAGAACGTGAAAGCGAAGATTCAA-GATAAGGAAGGCATCCCACCTGACCA 291766 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || ||||||| || ||||||||||| ||||| | ||| || || || ||||| Sbjct 291765 GCAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAA 291706 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||| || || || ||||||| Sbjct 291705 CATCCAGAAAGAATCTACCCTTCACCTAGTGCT 291673 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || | ||||| |||| || ||| | | Sbjct 292112 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 292053 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| |||| || || | ||| || || ||||| || ||||||||||| Sbjct 292052 GACACAATTGAGAACGTGAAAGCGAAGATTCAA-GATAAGGAAGGCATCCCACCTGACCA 291994 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || ||||||| || ||||||||| |||| || | ||| || || || ||||| Sbjct 291993 GCAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACATTGTCTGACTACAA 291934 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||| || || || ||||||| Sbjct 291933 CATCCAGAAAGAATCTACCCTTCACCTAGTGCT 291901 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || | ||||| |||| || ||| | | Sbjct 291428 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291369 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| |||| || || | ||| || || ||||| || ||||||||||| Sbjct 291368 GACACAATTGAGAACGTGAAAGCGAAGATTCAA-GATAAGGAAGGCATCCCACCTGACCA 291310 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || ||||||| || ||||||||| |||| || | ||| ||| || |||||||| Sbjct 291309 GCAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACTTTGTCTGATTACAA 291250 Query 25178 TATTCAAAAAGAATCCAC 25195 || || ||||| || || Sbjct 291249 CATCCAGAAAGAGTCTAC 291232 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||| ||||| |||| || || | ||||| | || || ||| | Sbjct 292343 ACGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACTATCACTCTTGAGGTCGAGGCT 292284 Query 25056 TCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || ||| |||| || || | ||| || || ||||| || |||||||| Sbjct 292283 AGCGACACAATTGAGAACGTGAAAGCGAAGATTCAA-GATAAGGAAGGCATCCCACCTGA 292225 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || ||||||| || ||||||||||| ||||| | ||| || || || || Sbjct 292224 CCAGCAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTA 292165 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || |||||||| || || || ||||||| Sbjct 292164 CAACATCCAGAAAGAATCTACCCTTCACCTAGTGCT 292129 >seq1332 Length=523337 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || || || ||||| || ||| |||| || | ||||| || || | Sbjct 494443 ATGCAGATATTCGTCAAAACATTGACAGGGAAAACCATAACTTTGGAAGTCGAATCAAGT 494384 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| | || |||| ||| || || |||||||||||||| || Sbjct 494383 GATACCATCGAAAATGTCA---AGGCGAAAATTCAG-GATAAGGAAGGGATTCCACCCGA 494328 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | |||||||| || || ||||| ||||| | |||||| | || || Sbjct 494327 CCAACAACGTCTGATTTTTGCAGGGAAGCAATTGGAAGACGGACGCACTCTCTCAGACTA 494268 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || |||||||| || ||||| || Sbjct 494267 CAACATCCAAAAAGAGTCTACGCTCCA 494241 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || |||| || |||| || ||| || | Sbjct 494671 ATGCAGATTTTCGTGAAGACGTTGACAGGAAAGACCATAACTCTCGAGGTTGAGGCGAGT 494612 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| ||||| | || | ||| || || ||||| ||||||||||| || Sbjct 494611 GATACCATCGAGAATGTGAAGGCTAAGATTCAA-GATAAGGAAGGCATTCCACCTGATCA 494553 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || |||||||| ||||||||| |||||| | || ||||| Sbjct 494552 GCAGCGCTTGATTTTCGCGGGCAAACAGCTAGAAGATGGACGCACTCTTTCTGACTACAA 494493 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || ||||| ||||| || || || Sbjct 494492 CATCCAAAAGGAATCGACTCTTCA 494469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433305037407620