Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1456 149 7e-31 >seq1456 Length=366961 Score = 149 bits (164), Expect = 7e-31 Identities = 506/790 (64%), Gaps = 40/790 (5%) Strand=Plus/Plus Query 92936 AATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCG 92995 ||||| ||||| || ||||||| | || ||||| || | | || || || | ||| Sbjct 310684 AATTCGATGTAGCGACACATCAACTTGCAGTTCATACCAATCAAACTCACTGGCAAAGCA 310743 Query 92996 TCGGTCAAGAAATCTTTCT-CGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACT 93054 || | |||||| ||| | | ||| | || || || || | ||| | | || | | Sbjct 310744 TCCGA-AAGAAACTTTTGTTCTATTTCTACCGCCTCCTTAATGATGGCAAGCACACGATC 310802 Query 93055 ATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACC 93114 |||| || ||||| || | || ||||||| ||||| || |||||| |||| ||| Sbjct 310803 CTTTGCAGGCTTTTGAACAATGTATTTGTACAGCAAGCAGGCGAAGTCGCAGTGTAGACC 310862 Query 93115 TTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTT 93174 || || | |||| ||||||||||||||||| || || | || || ||||| || Sbjct 310863 CTCATCCCTACTGATCAGTTCATTGCTGAATGTTAACCCAGGCATCAAACCGCGTTTTTT 310922 Query 93175 GAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGC 93234 ||||||||||||| || || || ||||| || || ||||| || || || ||||| || Sbjct 310923 CAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAAATACCCTCGACTGCAGCAAAGGC 310982 Query 93235 CACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGC 93294 || ||||| || ||||| | | | || | ||||| || | ||||| | || Sbjct 310983 AACTATACGCTCCGCAAACGTAGAATGAGTATCACCAATCCAGTTGAGCGCCCATTGCGC 311042 Query 93295 TTTTTTCTTAATACAAGGTAGTGTTTC-GATAGCGTTAAATAGGTAATCTC-GCTCG--- 93349 || | | | ||| ||| ||| | ||| ||||| || ||| |||| | || | Sbjct 311043 CTTCTGCGCGACACACTCTAG-GTTGCTGATGGCGTTGAACAGGAAATCCCTGCGAGAAT 311101 Query 93350 -------------------TCC-------------GAATCTCGTATGTATGTATCGATTA 93377 ||| | |||| || ||||| || || | Sbjct 311102 ACACAAATTAAAATAAGATTCCTTACCGTTCTGTTGGATCTTTGATATATGTGTCAATCA 311161 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 || |||||||| || ||||| | ||||| || || || || | || || ||||| | Sbjct 311162 GAAGTGAATACATCTCTGAATGTATGTTCTCGATGGCGATCTGCATCCCATAAAAACACC 311221 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 | |||| | || ||||||||| || | ||| || | ||| || ||||| | Sbjct 311222 GGACCTCCGGAACTTGAACTTCTTGACTGAAACGCTCGACCAAATTCTCTAGCACTATTC 311281 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 |||| ||| ||||| || || || | || || || || || | | || | Sbjct 311282 CATCACTTGCAGCAAAGAAGGCTAACACATATGAGATGAAGTGACGTTCGCCGACCTTGA 311341 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | ||| ||| || | ||| || || |||||||| || || || ||||||||||||| Sbjct 311342 GACTATTCCAGTCACTAAAATCCTTGGAGAGATCGACCTCCTCAACGGTCCAAAACGATG 311401 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 | ||||||| || || | | ||| | || || ||||| || || |||| ||||| | Sbjct 311402 CGACTGCTTTCTTATAAAACTGCCAAACATCGTGGTATTGGATGGGGAATAGAACAAATC 311461 Query 93678 GATTAGGGTT 93687 ||| ||||| Sbjct 311462 GATGTGGGTT 311471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556830534615520