Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1332 156 4e-33 seq1867 140 3e-28 seq1873 125 6e-24 >seq1332 Length=523337 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| ||||||| || || ||||||| || || || | | Sbjct 494215 ATGCAAATTTTTGTTAAAACGCTAACCGGAAAGACTATCACTCTGGAGGTCGAGGCTAGT 494156 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| || |||||||| |||||||| ||||| || ||||| Sbjct 494155 GATACGATCGAGAACGTTAAAGCTAAGATTCAAGATAAGGAGGGCATTCCTCCAGATCAG 494096 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||| ||||| || || ||||| |||| ||||||||| Sbjct 494095 CAGCGTTTGATTTTTGCAGGCAAGCAGTTGGAAGACGGTCGCACTCTCTCTGATTACAAC 494036 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 |||||||| |||||||| | ||||| || | || ||||| || |||| Sbjct 494035 ATTCAAAAGGAATCCACTCTTCATTTGGTGCTCCGTTTGCGTGGCGGTT 493987 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || ||||| || || || ||||| | ||| | ||||| ||| | | Sbjct 494444 GATGCAGATATTCGTCAAAACATTGACAGGGAAAACCATAACTTTGGAAGTCGAATCAAG 494385 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | || || |||| |||||||| || ||||| || ||||||||||| || Sbjct 494384 TGATACCATCGAAAATGTCAAGGCGAAAATTCAGGATAAGGAAGGGATTCCACCCGACCA 494325 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||||||| || ||||| || || || || || || ||||| |||| || ||||| Sbjct 494324 ACAACGTCTGATTTTTGCAGGGAAGCAATTGGAAGACGGACGCACTCTCTCAGACTACAA 494265 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| |||||||| || || | || | ||| | ||| | ||||| || Sbjct 494264 CATCCAAAAAGAGTCTACGCTCCACCTTGTTCTCCGACTTCGCGGTGG 494217 >seq1867 Length=410790 Score = 140 bits (154), Expect = 3e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | |||||||| ||| |||| |||||||| ||| | | | Sbjct 315235 ATGCAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAGC 315176 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || ||||||||||| || || || ||||| || || Sbjct 315175 GATACCATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGCATCCCACCTGACCAG 315116 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || |||||||||||||| | || || || || | |||||||||||| Sbjct 315115 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAAC 315056 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATTT 22455 || |||||||||||||| | ||| | || | || | ||||| |||| ||||| Sbjct 315055 ATCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGTCTACGCGGTGGTTAATCATTT 314999 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| |||||||| ||| | | | Sbjct 315463 ATGCAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAAGC 315404 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || |||||||||||||| || || ||||| || || Sbjct 315403 GATACCATTGAGAATGTAAAGGCGAAGATTCAAGACAAGGAAGGCATCCCACCTGACCAG 315344 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || |||||||||||||| | || || || || | |||||||||||| Sbjct 315343 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAAC 315284 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||||||||| Sbjct 315283 ATCCAAAAAGAATCCAC 315267 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || || || |||| || || || || ||| Sbjct 291428 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291369 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| || |||||||| ||||| || || ||||| || || Sbjct 291368 GACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 291309 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| || || |||||||| ||||||| || || | || ||||||||| Sbjct 291308 CAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACTTTGTCTGATTACAAC 291249 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || || ||||| || || | || || |||||||| | || || |||| Sbjct 291248 ATCCAGAAAGAGTCTACTTTGCACTTGGTTTTGCGCCTTCGTGGTGGTT 291200 >seq1873 Length=396352 Score = 125 bits (138), Expect = 6e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || || | || ||||| || ||| | Sbjct 292486 AAGATGCAGATCTTCGTCAAGACACTCACGGGAAAGACTATTACGCTTGAGGTTGAAGCA 292545 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || ||||| || |||||||||||||| || || || || ||| Sbjct 292546 TCGGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAAGGGATCCCTCCAGAT 292605 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||||| | || || || || || || | ||||| ||| || | || |||||| Sbjct 292606 CAACAACGATTGATTTTCGCGGGAAAGCAACTGGAGGACGGCCGTACTCTTTCTGATTAC 292665 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||||||| |||||||||||| | ||| | ||| ||||| Sbjct 292666 AACATTCAGAAAGAATCCACCTTGCATCTGGTTCTGCGA 292704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419705758088620