Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1867 138 1e-27 seq1332 93.3 4e-14 seq1873 87.8 2e-12 >seq1867 Length=410790 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || ||||| | | || | ||| | || ||||||||||| |||||||||||| Sbjct 315008 ACCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGA 315067 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| ||| |||||||||||||| || || | || | |||||| ||||| || || Sbjct 315068 CAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGG 315127 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||||||||||| |||||| || | | |||| ||| ||| | | ||| || Sbjct 315128 GATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAAC 315187 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | ||| || |||||||| || || ||||| ||||||||| Sbjct 315188 TTCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCATG 315236 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | |||||| || || | ||||| ||||| || ||||||||||| Sbjct 291201 ACCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGA 291260 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||||| || || |||||||| |||||| | || || || || ||||| || || Sbjct 291261 CAAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGG 291320 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||||| || || |||||| ||| | | |||| ||||| ||| ||||| Sbjct 291321 GATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 291380 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || ||||| ||||| || || |||||||||||||| Sbjct 291381 CTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | |||| || | ||||||||||| || |||||||| || Sbjct 291427 ATACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA 291486 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||||| | |||||| |||||| | || || || || ||||| || Sbjct 291487 GACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGT 291546 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| || || |||||| ||| | | |||| ||||| ||| ||| Sbjct 291547 GGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCG 291606 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || |||||||||||||| Sbjct 291607 ACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | |||| || | ||||||||||| || |||||||| || Sbjct 291655 ATACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA 291714 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||||| | |||||| |||||| | || || || || ||||| || Sbjct 291715 GACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGT 291774 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| || || |||||| ||| | | |||| ||||| ||| ||| Sbjct 291775 GGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCG 291834 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || |||||||||||||| Sbjct 291835 ACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | |||| || | ||||||||||| || |||||||| || Sbjct 291883 ATACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA 291942 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || || |||||||| |||||| | || || || || ||||| || Sbjct 291943 GACAATGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGT 292002 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| || || |||||| ||| | | |||| ||||| ||| ||| Sbjct 292003 GGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCG 292062 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || |||||||||||||| Sbjct 292063 ACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 116 bits (128), Expect = 3e-21 Identities = 170/239 (71%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||| | || ||||||||||| |||||||||||| Sbjct 315234 ATGCCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCG 315293 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| ||| |||||||||||||| || || | || | |||||| ||||| || Sbjct 315294 GACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGT 315353 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||| |||| | |||| ||| ||| | | ||| Sbjct 315354 GGGATGCCTTCCTTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCA 315413 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAATT 114391 || || | ||| | || || || || || || || || || || ||||| || ||||| Sbjct 315414 ACTTCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATTGC-TAATT 315471 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | |||| || | ||||||||||| || |||||||| || Sbjct 292111 ATACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA 292170 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||||| | |||||| |||||| | || || || || ||||| || Sbjct 292171 GACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGT 292230 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| || || |||||| ||| | | |||| |||||| | | ||| Sbjct 292231 GGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCG 292290 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| ||||| || || ||||| |||||||| Sbjct 292291 ACCTCAAGAGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 >seq1332 Length=523337 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| | | | || ||||| | || ||||| ||||||||||||||||| Sbjct 493988 ACCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 494047 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| ||| ||||| | || || || || | || | |||||| || || ||||| Sbjct 494048 GAGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGG 494107 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| || || || |||||| ||| | | || | || || | | ||||| Sbjct 494108 AATGCCCTCCTTATCTTGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGAC 494167 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| || | || || ||||| || ||||| |||||||| |||||| Sbjct 494168 CTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCATG 494216 >seq1873 Length=396352 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||| || ||| | ||| | || |||||||| |||||||||||||| | |||||| Sbjct 292706 AGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTACGG 292647 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 || || ||||| || || ||| | || | || ||||| || ||||| || ||||| Sbjct 292646 CCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGGGATCCCTTCC 292587 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| |||||| ||| | | ||| | ||| || | | ||| || || | || Sbjct 292586 TTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCAACCTCAAGCGTA 292527 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || || || || || || || |||||||| Sbjct 292526 ATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 292489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420112136552976