Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1456 120 6e-22 seq2115 102 2e-16 >seq1456 Length=366961 Score = 120 bits (132), Expect = 6e-22 Identities = 256/380 (67%), Gaps = 7/380 (2%) Strand=Plus/Minus Query 42646 AGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGC 42705 |||||||| | ||||||||||||||||| | | | | | ||||| | ||| | Sbjct 311047 AGAAGGCGCAATGGGCGCTCAACTGGATTGGTGATACTCATTCTACGTTTGCGGAGCGTA 310988 Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 | || |||||| | || |||||||| || |||||||| ||| ||||||| | || || | Sbjct 310987 TAGTTGCCTTTGCTGCAGTCGAGGGTATTTTCTTCTCTGGCAGCTTCGCCGCAATATTTT 310928 Query 42766 GGCTCAAGCAGAAGGTG--TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 |||| || | || | | | |||||| || | || ||| || ||||| ||||| || Sbjct 310927 GGCTGAA--AAAACGCGGTTTGATGCCTGGGTTAACATTCAGCAATGAACTGATCAGTAG 310870 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883 ||| ||||| || || | ||||| |||||| | |||| | | || | || || Sbjct 310869 GGATGAGGGTCTACACTGCGACTTCGCCTGCTTGCTGTAC---AAATACATTGTTCAAAA 310813 Query 42884 GCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 ||| | ||||| || || | |||||||| | |||||| || || || || | |||| Sbjct 310812 GCCTGCAAAGGATCGTGTGCTTGCCATCATTAAGGAGGCGGTAGAAATAGAACAAAAGTT 310753 Query 42944 CCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTA 43003 || || | | |||| ||| || | || |||||| | | | ||||| || Sbjct 310752 TCTTTCGGATGCTTTGCCAGTGAGTTTGATTGGTATGAACTGCAAGTTGATGTGTCGCTA 310693 Query 43004 CATCCAGTACGTCGCCGACC 43023 |||| | | | |||| |||| Sbjct 310692 CATCGAATTCATCGCGGACC 310673 >seq2115 Length=135315 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 |||| | |||||| || || |||||||| ||| |||||| ||||| ||||| |||||| Sbjct 37838 TACTCAATAATCTCTGTACACAGGTTACTACACCGGATGGTTCCCAGATGCTGATGATTG 37897 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 ||||| |||||| || |||||||| ||||||||||| ||||| |||| ||| || Sbjct 37898 GACTTCCTGTTGCAAGCATCCTTGTACAGCATGAAGGGAGTTCCGGTTTCGATCTGAGC 37956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944287875164480