Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1332 109 4e-19 seq2400 91.5 1e-13 seq2360 82.4 6e-11 seq290 82.4 6e-11 >seq1332 Length=523337 Score = 109 bits (120), Expect = 4e-19 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 |||| || | || || ||||||| |||||| ||| ||||| |||||||||||||| | Sbjct 493987 AACCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAG 494046 Query 33959 CCA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 | | || || |||| ||||| |||||||| ||||| |||| ||||||||||| Sbjct 494047 AGAGAGTG-CGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGA 494105 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTC 34076 || | || ||| || | | | | | || |||| | | ||| | ||||| ||| || Sbjct 494106 GGAATGCCCTCCTTAT-CTTGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTC 494164 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || | || || || ||||||||||| ||||| ||||| |||||||| Sbjct 494165 GACCTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 >seq2400 Length=894102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATTG-CTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 114388 || ||||||||| ||||||||||||||| |||||||| ||| | ||| |||| ||||| Sbjct 396274 TGGCATGTATTGGCTCTAGAATTACCACAGTTATCCATGTAG-TATGTACGATCCAAGGA 396332 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 |||| | ||||| |||||||||||||| ||| || Sbjct 396333 ACCATAGCTGATTTATTGAGCCATTCGCGGTTTC 396366 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATTG-CTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 115585 || ||||||||| ||||||||||||||| |||||||| ||| | ||| |||| ||||| Sbjct 396274 TGGCATGTATTGGCTCTAGAATTACCACAGTTATCCATGTAG-TATGTACGATCCAAGGA 396332 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 |||| | ||||| |||||||||||||| ||| || Sbjct 396333 ACCATAGCTGATTTATTGAGCCATTCGCGGTTTC 396366 >seq2360 Length=1183466 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 114388 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 845541 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 845599 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 |||| | ||||| || ||||||||||| ||| || Sbjct 845600 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 845633 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 115585 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 845541 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 845599 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 |||| | ||||| || ||||||||||| ||| || Sbjct 845600 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 845633 >seq290 Length=23845 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 114388 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 19641 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 19699 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 |||| | ||||| || ||||||||||| ||| || Sbjct 19700 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 19733 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 115585 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 19641 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 19699 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 |||| | ||||| || ||||||||||| ||| || Sbjct 19700 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 19733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397041359167096