Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_009514.1 Length=47021 Score E Sequences producing significant alignments: (Bits) Value seq1110 479 9e-131 >seq1110 Length=2318 Score = 479 bits (530), Expect = 9e-131 Identities = 375/446 (84%), Gaps = 3/446 (1%) Strand=Plus/Plus Query 45903 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCG 45962 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1609 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 1668 Query 45963 TGGGCGGTCAATCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGTGATAAAAAA 46022 ||||| || ||||||||||||||||||||||| ||||||||| ||||| || ||||| Sbjct 1669 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 1728 Query 46023 GTCAGTGAGCTGAAGCAGGCGACCGCCACCATCGCTGACATGCAGCAGCGTCAGCGTGAT 46082 | ||| || ||||||| ||||| ||| | || |||| |||||| ||||||||||||| Sbjct 1729 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGAT 1788 Query 46083 GTTGCTGCGATCGATGCAAAATACACGAAGGAGTTAGCCGATGCGAAAACTGAAAATGAA 46142 ||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 1789 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGAT 1848 Query 46143 ACTCTGCGCGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGGTCAATGCCAGTTGCTCC 46202 ||||||| | ||||||||||||||||||| || ||| |||| | |||| || Sbjct 1849 GCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAG-CAGTCTGTCA 1907 Query 46203 GCAGCCGTGCGTGAAGCCACCGGACCCACCAGCATGGATAATGCAACCAGCCCCCGACTG 46262 | | ||||||||||||||| || || || ||||||||||| || |||||||||| Sbjct 1908 G--TCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTG 1965 Query 46263 GCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAACGGTTGATGACGATGCAGAAG 46322 |||||||||||||||||||||||||||||||||||||| || |||| || ||||| || Sbjct 1966 GCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAA 2025 Query 46323 CAACTGGAAGGGGCGCAGGAATATAT 46348 ||||||||||| | ||| | ||||| Sbjct 2026 CAACTGGAAGGAACCCAGAAGTATAT 2051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150337837280808