Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1867 179 9e-40 seq1332 176 1e-38 seq1873 123 6e-23 >seq1867 Length=410790 Score = 179 bits (198), Expect = 9e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || ||||| | ||| |||||||||||| || || |||| Sbjct 315009 CCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315068 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | |||||| || || || |||| |||||| || | |||| Sbjct 315069 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315128 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || || || ||||| ||||| || || || | |||||| | ||| ||| Sbjct 315129 ATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACT 315188 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| |||||||| ||||| || ||||||||||| Sbjct 315189 TCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 159 bits (176), Expect = 8e-34 Identities = 176/233 (76%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || ||||| | ||| |||||||||||| || || | Sbjct 315233 CATG-CCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAAT 315291 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || || |||||||| | |||||| || || || |||| |||||| || | Sbjct 315292 CGGACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAG 315351 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| ||||| || || || || ||||| || || || || || | |||||| | || Sbjct 315352 GTGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTT 315411 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | ||||| || ||||| |||||||| || || ||||| |||||||| |||||| Sbjct 315412 CAACTTCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || || |||| || |||||| ||||| || ||||| | Sbjct 291430 CCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 291489 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || |||||||| |||||||| || ||||| || || || || || | |||| Sbjct 291490 AATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 291549 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || || |||||||||||||| || || | || || | || || Sbjct 291550 ATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACC 291609 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 291610 TCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || || |||| || |||||| ||||| || ||||| | Sbjct 291658 CCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 291717 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || |||||||| |||||||| || ||||| || || || || || | |||| Sbjct 291718 AATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 291777 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || || |||||||||||||| || || | || || | || || Sbjct 291778 ATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACC 291837 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 291838 TCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || || |||| || |||||| ||||| || ||||| | Sbjct 292114 CCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 292173 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || |||||||| |||||||| || ||||| || || || || || | |||| Sbjct 292174 AATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 292233 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || || |||||||||||||| || || | ||||| | || || Sbjct 292234 ATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGACC 292293 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 292294 TCAAGAGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || || |||| || |||||| ||||| || ||||| | Sbjct 291886 CCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 291945 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || ||||| |||| |||||| || ||||| || || || || || | |||| Sbjct 291946 AATGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 292005 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || || |||||||||||||| || || | || || | || || Sbjct 292006 ATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACC 292065 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 292066 TCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | | || || ||||| |||| |||||| || ||||| Sbjct 291238 TCTTTCTGGATGTTGTAATCAGACAAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAA 291297 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || || || || | |||||| ||||| ||||| || || |||||||||||||| Sbjct 291298 ATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTC 291357 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || ||||| ||||| ||||| || ||||| ||||| || Sbjct 291358 TCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACA 291417 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 291418 AAAATCTGCAT 291428 >seq1332 Length=523337 Score = 176 bits (194), Expect = 1e-38 Identities = 179/232 (77%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| |||| || || || || | ||| ||||||||||| || |||| Sbjct 494213 CATG-CCACCGCGAAGTCGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGT 494271 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| |||||||||||||| ||||| || ||||| || |||||||| ||||| Sbjct 494272 CTGAGAGAGTGCGTCCGTCTTCCAATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGG 494331 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| || ||||| |||||||| |||||||| || || ||||| || | ||| || |||| Sbjct 494332 GTGGAATCCCTTCCTTATCCTGAATTTTCGCCTTGACATTTTCGATGGTATCACTTGATT 494391 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| | || || || ||||| |||| || ||||||||||||||||| Sbjct 494392 CGACTTCCAAAGTTATGGTTTTCCCTGTCAATGTTTTGACGAATATCTGCAT 494443 >seq1873 Length=396352 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| || || ||||| | ||| |||||| || || || || || | Sbjct 292715 CCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAA 292656 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || ||||| || | ||| ||||| ||||| |||| || |||||| ||||| Sbjct 292655 AGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGA---TCTGGA 292599 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || || || || || ||||| || ||||| || | ||| | ||| Sbjct 292598 GGGATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCA 292539 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| || || || ||||||||||| |||||||| Sbjct 292538 ACCTCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 292489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179588682927944