Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq1110 902 0.0 seq1097 511 2e-140 >seq1110 Length=2318 Score = 902 bits (1000), Expect = 0.0 Identities = 588/644 (91%), Gaps = 3/644 (0%) Strand=Plus/Plus Query 29325 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 29384 || ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 1678 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 1737 Query 29385 CTGGAACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCG 29444 ||| | | |||||| || | |||||||| |||||| |||| |||||||||||||||||| Sbjct 1738 CTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCG 1797 Query 29445 CTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 29504 ||||||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||||| Sbjct 1798 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGT 1857 Query 29505 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAACGCCACCTGCTCCGGTACCGTG 29564 | ||||||||||||||||||| || ||| ||||| || ||| | || | ||| Sbjct 1858 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGT--CAGT-CAGTG 1914 Query 29565 CGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACC 29624 |||||||||||| | |||||||||||||||||||| || ||||||||||||||||||| Sbjct 1915 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACC 1974 Query 29625 GCTGAACGGGATTATTTCATCCTCAGAGAGAGGGTGATCACTATGCAAAAACAACTGGAA 29684 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 1975 GCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTGGAA 2034 Query 29685 GGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGATGGGCAACT 29744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2035 GGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGATGGGCAACT 2094 Query 29745 CATGCAAGTATTGTGAGCAATACACCCGCGCTTCCAGCGGAGTATAAATGCCTAAAGTAA 29804 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2095 CATGCAATTATTGTGAGCAATACACACGCGCTTCCAGCGGAGTATAAATGCCTAAAGTAA 2154 Query 29805 TAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTG 29864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2155 TAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTG 2214 Query 29865 TGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGA 29924 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2215 CGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGA 2274 Query 29925 AATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTG 29968 |||||||||||||||||||||||||||||||||||| | ||||| Sbjct 2275 AATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGCCGGTTTG 2318 >seq1097 Length=3195 Score = 511 bits (566), Expect = 2e-140 Identities = 297/306 (97%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 5802 TACCCGGATATTATCGTGAGGATGCTTCATTACCATTGCTCCCCATATACAAAACCAATT 5861 ||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| Sbjct 314 TACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATT 373 Query 5862 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 5921 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 433 Query 5922 ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGG 5981 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 434 ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGG 493 Query 5982 TCATAGTTGGCAAAGTACCAGGCATCTTTTCGTGTCACCCACATGCTGTACTGCACCTGG 6041 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 494 TCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGG 553 Query 6042 GCCATGTAAGCCGATTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGG 6101 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 554 GCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGG 613 Query 6102 GAGGTA 6107 |||||| Sbjct 614 GAGGTA 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202728456596368